Science Score: 39.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
✓DOI references
Found 2 DOI reference(s) in README -
○Academic publication links
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○Committers with academic emails
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (10.8%) to scientific vocabulary
Keywords
Repository
Perform phylogenetic path analysis in R.
Basic Info
- Host: GitHub
- Owner: Ax3man
- Language: R
- Default Branch: master
- Homepage: https://ax3man.github.io/phylopath/
- Size: 17.7 MB
Statistics
- Stars: 13
- Watchers: 3
- Forks: 3
- Open Issues: 2
- Releases: 5
Topics
Metadata Files
README.md
phylopath
This package implements phylogenetic path analysis in R.
Install the package using:
{r}
install.packages("phylopath")
You may need to install the downstream dependency graph from Bioconductor:
{r}
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")
BiocManager::install("graph")
Or if you'd like to install the development version (here on github), use:
{r}
remotes::install_github("Ax3man/phylopath")
It's easiest to start on the website and first read the introduction here, or read the paper in PeerJ.
If you find any problems, or if you have suggestions for improvements, please file those under issues. PRs welcome.
Owner
- Name: Wouter van der Bijl
- Login: Ax3man
- Kind: user
- Location: Vancouver
- Company: University of British Columbia
- Website: woutervdbijl.com
- Twitter: _Axeman_
- Repositories: 3
- Profile: https://github.com/Ax3man
Evolutionary biologist.
GitHub Events
Total
- Watch event: 2
- Push event: 2
Last Year
- Watch event: 2
- Push event: 2
Committers
Last synced: 7 months ago
Top Committers
| Name | Commits | |
|---|---|---|
| Ax3man | w****l@z****e | 284 |
| Ax3man | q****l@h****m | 2 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 7 months ago
All Time
- Total issues: 25
- Total pull requests: 0
- Average time to close issues: 4 months
- Average time to close pull requests: N/A
- Total issue authors: 14
- Total pull request authors: 0
- Average comments per issue: 3.08
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 1
- Pull requests: 0
- Average time to close issues: about 5 hours
- Average time to close pull requests: N/A
- Issue authors: 1
- Pull request authors: 0
- Average comments per issue: 2.0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- Ax3man (9)
- RyutaroUchiyama (2)
- Madeleinecg (2)
- thomasp85 (2)
- mfansler (1)
- abraao-crypto (1)
- jferrerobiol (1)
- MaxKerney (1)
- ManuelaGonzalez (1)
- hcliedtke (1)
- James-Thorson-NOAA (1)
- SimonGreenhill (1)
- Joseph-Watts (1)
- LouisBell-Roberts (1)
Pull Request Authors
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
-
Total downloads:
- cran 727 last-month
- Total dependent packages: 2
- Total dependent repositories: 0
- Total versions: 17
- Total maintainers: 1
cran.r-project.org: phylopath
Perform Phylogenetic Path Analysis
- Homepage: https://Ax3man.github.io/phylopath/
- Documentation: http://cran.r-project.org/web/packages/phylopath/phylopath.pdf
- License: GPL-3
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Latest release: 1.3.1
published 6 months ago
Rankings
Maintainers (1)
Dependencies
- R >= 2.10 depends
- MuMIn >= 1.15.6 imports
- ape >= 4.1 imports
- ggm >= 2.3 imports
- ggplot2 >= 3.0.0 imports
- ggraph >= 1.0.0 imports
- igraph >= 1.0.1 imports
- parallel * imports
- pbapply >= 1.3 imports
- phylolm >= 2.5 imports
- purrr >= 0.2.3 imports
- tibble * imports
- knitr * suggests
- rmarkdown * suggests
- testthat * suggests