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phytools

https://github.com/liamrevell/phytools

Science Score: 36.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    1 of 4 committers (25.0%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (5.0%) to scientific vocabulary
Last synced: 10 months ago · JSON representation

Repository

Basic Info
  • Host: GitHub
  • Owner: liamrevell
  • License: gpl-3.0
  • Language: R
  • Default Branch: master
  • Size: 1.89 MB
Statistics
  • Stars: 223
  • Watchers: 22
  • Forks: 57
  • Open Issues: 48
  • Releases: 1
Created almost 11 years ago · Last pushed 12 months ago
Metadata Files
Readme License

README.md

This repository contains source code, documentation, and R data for the project "phytools 2.0: an updated R ecosystem for phylogenetic comparative methods (and other things)."

The development version of phytools can be most easily installed using the remotes package as follows:

remotes::install_github("liamrevell/phytools")

Comments & pull requests are welcome; however, those not involving actual software bugs (which I always try to fix as promptly as I can) may not always be addressed in a timely manner.

Owner

  • Name: Liam J. Revell
  • Login: liamrevell
  • Kind: user

GitHub Events

Total
  • Issues event: 5
  • Watch event: 15
  • Issue comment event: 7
  • Push event: 30
  • Fork event: 1
Last Year
  • Issues event: 5
  • Watch event: 15
  • Issue comment event: 7
  • Push event: 30
  • Fork event: 1

Committers

Last synced: over 2 years ago

All Time
  • Total Commits: 1,192
  • Total Committers: 4
  • Avg Commits per committer: 298.0
  • Development Distribution Score (DDS): 0.346
Past Year
  • Commits: 209
  • Committers: 2
  • Avg Commits per committer: 104.5
  • Development Distribution Score (DDS): 0.335
Top Committers
Name Email Commits
Liam J. Revell l****l@u****u 779
Liam J. Revell l****l@g****m 406
KlausVigo k****p@g****m 6
Joseph W. Brown p****b@g****m 1
Committer Domains (Top 20 + Academic)
umb.edu: 1

Issues and Pull Requests

Last synced: 10 months ago

All Time
  • Total issues: 123
  • Total pull requests: 9
  • Average time to close issues: 6 months
  • Average time to close pull requests: over 1 year
  • Total issue authors: 100
  • Total pull request authors: 7
  • Average comments per issue: 1.91
  • Average comments per pull request: 0.56
  • Merged pull requests: 1
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 9
  • Pull requests: 0
  • Average time to close issues: about 2 hours
  • Average time to close pull requests: N/A
  • Issue authors: 8
  • Pull request authors: 0
  • Average comments per issue: 0.56
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • HedvigS (8)
  • AgustinPardo (5)
  • Jigyasa3 (4)
  • alexweisberg (3)
  • theo-allnutt-bioinformatics (3)
  • alrichardbollans (2)
  • Ruiqi-CUB (2)
  • baptelie (2)
  • flashton2003 (2)
  • aleungplants (2)
  • agroppi (1)
  • SolayMane (1)
  • maxfarrell (1)
  • losblancos3 (1)
  • ucassee (1)
Pull Request Authors
  • willgearty (2)
  • josephwb (2)
  • milliescient (2)
  • joelnitta (1)
  • HedvigS (1)
  • fpavone (1)
  • AEgit (1)
Top Labels
Issue Labels
Pull Request Labels

Packages

  • Total packages: 2
  • Total downloads:
    • cran 8,371 last-month
  • Total docker downloads: 133,118
  • Total dependent packages: 68
    (may contain duplicates)
  • Total dependent repositories: 160
    (may contain duplicates)
  • Total versions: 58
  • Total maintainers: 1
cran.r-project.org: phytools

Phylogenetic Tools for Comparative Biology (and Other Things)

  • Versions: 51
  • Dependent Packages: 65
  • Dependent Repositories: 156
  • Downloads: 8,371 Last month
  • Docker Downloads: 133,118
Rankings
Forks count: 1.3%
Dependent packages count: 1.4%
Dependent repos count: 1.6%
Stargazers count: 2.5%
Average: 2.7%
Downloads: 4.4%
Docker downloads count: 4.8%
Maintainers (1)
liam.revell@umb.edu
Last synced: 10 months ago
conda-forge.org: r-phytools
  • Versions: 7
  • Dependent Packages: 3
  • Dependent Repositories: 4
Rankings
Dependent packages count: 15.6%
Dependent repos count: 16.2%
Average: 21.1%
Forks count: 24.1%
Stargazers count: 28.6%
Last synced: 11 months ago

Dependencies

DESCRIPTION cran
  • R >= 3.5.0 depends
  • ape >= 4.0 depends
  • maps * depends
  • MASS * imports
  • clusterGeneration * imports
  • coda * imports
  • combinat * imports
  • expm * imports
  • grDevices * imports
  • graphics * imports
  • methods * imports
  • mnormt * imports
  • nlme * imports
  • numDeriv * imports
  • optimParallel * imports
  • parallel * imports
  • phangorn >= 2.3.1 imports
  • plotrix * imports
  • scatterplot3d * imports
  • stats * imports
  • utils * imports
  • RColorBrewer * suggests
  • animation * suggests
  • geiger * suggests
  • rgl * suggests