adegenet
adegenet: a R package for the multivariate analysis of genetic markers
Science Score: 23.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
○.zenodo.json file
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○DOI references
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○Academic publication links
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✓Committers with academic emails
4 of 20 committers (20.0%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (7.6%) to scientific vocabulary
Keywords from Contributors
genome
Last synced: 10 months ago
·
JSON representation
Repository
adegenet: a R package for the multivariate analysis of genetic markers
Basic Info
- Host: GitHub
- Owner: thibautjombart
- Language: R
- Default Branch: master
- Size: 51.5 MB
Statistics
- Stars: 193
- Watchers: 26
- Forks: 64
- Open Issues: 68
- Releases: 10
Created over 11 years ago
· Last pushed over 1 year ago
Metadata Files
Readme
Changelog
README.md
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adegenet
adegenet: a R Package for the Multivariate Analysis of Genetic Markers
This wiki is dedicated to the development of adegenet. It is relevant for developers of the package, developers of other packages depending on adegenet, and for users who want to be using the latest features as well.
The adegenet website is available at http://adegenet.r-forge.r-project.org/.
The following sections are available: - Installing adegenet devel - Tutorials - Ask a question - Features request / bug report - Branches - Contributors
Owner
- Name: Thibaut Jombart
- Login: thibautjombart
- Kind: user
- Location: France
- Company: Data.Org / Imperial College London
- Website: https://thibautjombart.netlify.com/
- Repositories: 14
- Profile: https://github.com/thibautjombart
Software Design Lead for Epiverse at Data.org. Senior Lecturer in outbreak analytics Imperial College London. R geek. Muay Thai enthusiast. Grindcore vocalist.
GitHub Events
Total
- Issues event: 7
- Watch event: 24
- Delete event: 2
- Issue comment event: 20
- Push event: 15
- Pull request event: 9
- Fork event: 3
- Create event: 2
Last Year
- Issues event: 7
- Watch event: 24
- Delete event: 2
- Issue comment event: 20
- Push event: 15
- Pull request event: 9
- Fork event: 3
- Create event: 2
Committers
Last synced: about 1 year ago
Top Committers
| Name | Commits | |
|---|---|---|
| Thibaut Jombart | t****t@g****m | 374 |
| Zhian Kamvar | k****z@s****u | 297 |
| caitiecollins | c****7@g****m | 53 |
| Thibaut Jombart | t****t@i****k | 38 |
| romunov | r****v@g****m | 13 |
| Julian Dupuis | j****s | 6 |
| Brian J. Knaus | b****s@g****m | 6 |
| KlausVigo | k****p@g****m | 5 |
| Alexandre Courtiol | a****l@g****m | 5 |
| Tiago Maié | t****e@h****m | 4 |
| Vladimir Mikryukov | v****k | 3 |
| Becca DeCamp | 3****p | 3 |
| Marie-Pauline Beugin | m****n@g****m | 3 |
| Libor Mořkovský | l****k@g****m | 2 |
| Lindsay Clark | l****k@i****u | 2 |
| Pavel V. Dimens | p****s@l****m | 2 |
| Frederic Michaud | f****1@b****h | 2 |
| Aurélie Siberchicot | a****t@u****r | 1 |
| rjewing | e****j@g****m | 1 |
| valemon | m****o@g****m | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 11 months ago
All Time
- Total issues: 90
- Total pull requests: 35
- Average time to close issues: 5 months
- Average time to close pull requests: 7 months
- Total issue authors: 67
- Total pull request authors: 11
- Average comments per issue: 2.86
- Average comments per pull request: 1.83
- Merged pull requests: 31
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 3
- Pull requests: 9
- Average time to close issues: 1 day
- Average time to close pull requests: about 2 months
- Issue authors: 3
- Pull request authors: 3
- Average comments per issue: 1.67
- Average comments per pull request: 1.78
- Merged pull requests: 8
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- zkamvar (9)
- courtiol (5)
- laiajulianamu (3)
- plantarum (3)
- romunov (3)
- thibautjombart (3)
- Katrinhoh (2)
- kopelol (2)
- pdimens (2)
- burbrink (1)
- rdinnager (1)
- cryptic0 (1)
- NamLQ (1)
- mattbareno (1)
- cassondranewman (1)
Pull Request Authors
- zkamvar (23)
- libor-m (2)
- aursiber (2)
- knausb (1)
- KlausVigo (1)
- pdimens (1)
- thibautjombart (1)
- tiagomaie (1)
- courtiol (1)
- lvclark (1)
- timflutre (1)
Top Labels
Issue Labels
priority (3)
bug (3)
development status (2)
check: error (1)
help wanted (1)
documentation (1)
website (1)
check: Warnings / NOTES (1)
Pull Request Labels
Packages
- Total packages: 2
-
Total downloads:
- cran 13,093 last-month
- Total docker downloads: 43,492
-
Total dependent packages: 36
(may contain duplicates) -
Total dependent repositories: 85
(may contain duplicates) - Total versions: 52
- Total maintainers: 1
cran.r-project.org: adegenet
Exploratory Analysis of Genetic and Genomic Data
- Homepage: https://github.com/thibautjombart/adegenet
- Documentation: http://cran.r-project.org/web/packages/adegenet/adegenet.pdf
- License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
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Latest release: 2.1.11
published over 1 year ago
Rankings
Forks count: 1.1%
Dependent repos count: 2.5%
Dependent packages count: 2.6%
Stargazers count: 2.6%
Downloads: 4.8%
Average: 6.8%
Docker downloads count: 27.4%
Maintainers (1)
Last synced:
11 months ago
conda-forge.org: r-adegenet
- Homepage: https://github.com/thibautjombart/adegenet
- License: GPL-2.0-or-later
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Latest release: 2.1.8
published almost 4 years ago
Rankings
Dependent packages count: 8.0%
Average: 20.0%
Dependent repos count: 20.2%
Forks count: 23.0%
Stargazers count: 29.0%
Last synced:
11 months ago
Dependencies
DESCRIPTION
cran
- R >= 2.14 depends
- ade4 * depends
- methods * depends
- MASS * imports
- ape * imports
- boot * imports
- dplyr >= 0.4.1 imports
- ggplot2 * imports
- grDevices * imports
- igraph * imports
- parallel * imports
- reshape2 * imports
- seqinr * imports
- shiny * imports
- stats * imports
- utils * imports
- vegan * imports
- adespatial * suggests
- hierfstat * suggests
- interp * suggests
- maps * suggests
- pegas * suggests
- poppr * suggests
- spdep * suggests
- splancs * suggests
- testthat * suggests
.github/workflows/R-CMD-check.yaml
actions
- actions/checkout v3 composite
- r-lib/actions/check-r-package v2 composite
- r-lib/actions/setup-pandoc v2 composite
- r-lib/actions/setup-r v2 composite
- r-lib/actions/setup-r-dependencies v2 composite
docker/server/Dockerfile
docker
- rocker/verse latest build
docker/testing/Dockerfile
docker
- rocker/drd latest build