analogue
Analogue and weighted averaging methods for palaeoecology
Science Score: 36.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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○Academic publication links
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✓Committers with academic emails
1 of 5 committers (20.0%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (10.4%) to scientific vocabulary
Last synced: 10 months ago
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Repository
Analogue and weighted averaging methods for palaeoecology
Basic Info
Statistics
- Stars: 14
- Watchers: 6
- Forks: 3
- Open Issues: 7
- Releases: 3
Created about 12 years ago
· Last pushed about 1 year ago
Metadata Files
Readme
License
README.md
analogue
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What is analogue?
analogue is an R package for use with palaeoecological data. Originally, analogue was intended as an R implementation of analogue methods such as analogue matching, ROC curves, and MAT transfer function models, and the computation of dissimilarity coefficients. Since then the scope of the package has grown to include a number of other methods applicable to data routinely encountered in palaeoecology and palaeolimnology.
Features
- Transfer functions
- MAT
- Weighted Averaging with monotonic, inverse, and classical deshrinking, with and without tolerance down-weighting
- Principal Component Regression (using ecologically-relevant transformations)
- Cross-validation (Bootstrapping, leave-one-out, k-fold)
- Analogue statistics
- Analogue matching
- Dissimilarity coefficients
- Chord, Bray-Curtis, Gower's Generalised coefficient, Manhattan, ...
- Dissimilarity decisions thresholds
- ROC curves
- Monte Carlo resampling
- Logistic regression
- Stratigraphic diagrams
- Principal curves
Bugs, feature requests
Bug reports and feature requests should be filed as issues.
Licence
analogue is released under the GNU General Public Licence Version 2.
Links
Owner
- Name: Gavin Simpson
- Login: gavinsimpson
- Kind: user
- Location: Denmark
- Company: Aarhus University
- Website: fromthebottomoftheheap.net
- Twitter: ucfagls
- Repositories: 194
- Profile: https://github.com/gavinsimpson
GitHub Events
Total
- Issues event: 1
- Issue comment event: 1
- Push event: 2
Last Year
- Issues event: 1
- Issue comment event: 1
- Push event: 2
Committers
Last synced: about 1 year ago
Top Committers
| Name | Commits | |
|---|---|---|
| Gavin Simpson | u****s@g****m | 650 |
| Jari Oksanen | j****n@o****i | 16 |
| Martin Maechler | m****r@r****g | 1 |
| Stefan Theussl | s****l@R****g | 1 |
| Martin Pacala | m****a@w****t | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 11 months ago
All Time
- Total issues: 24
- Total pull requests: 4
- Average time to close issues: 8 months
- Average time to close pull requests: 4 months
- Total issue authors: 9
- Total pull request authors: 3
- Average comments per issue: 1.54
- Average comments per pull request: 0.75
- Merged pull requests: 2
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- gavinsimpson (15)
- richardjtelford (2)
- hadley (1)
- mmaechler (1)
- thetalladam (1)
- SimonGoring (1)
- jarioksa (1)
- rcannood (1)
Pull Request Authors
- jarioksa (3)
- mmaechler (1)
- rcannood (1)
Top Labels
Issue Labels
bug (11)
enhancement (10)
resolved (2)
Pull Request Labels
Packages
- Total packages: 2
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Total downloads:
- cran 1,023 last-month
- Total docker downloads: 110,395
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Total dependent packages: 4
(may contain duplicates) -
Total dependent repositories: 7
(may contain duplicates) - Total versions: 33
- Total maintainers: 1
cran.r-project.org: analogue
Analogue and Weighted Averaging Methods for Palaeoecology
- Homepage: https://github.com/gavinsimpson/analogue
- Documentation: http://cran.r-project.org/web/packages/analogue/analogue.pdf
- License: GPL-2
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Latest release: 0.18.1
published about 1 year ago
Rankings
Docker downloads count: 0.0%
Dependent packages count: 9.3%
Average: 10.4%
Dependent repos count: 11.1%
Stargazers count: 13.7%
Forks count: 14.1%
Downloads: 14.2%
Maintainers (1)
Last synced:
10 months ago
conda-forge.org: r-analogue
- Homepage: https://github.com/gavinsimpson/analogue
- License: GPL-2.0-only
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Latest release: 0.17_6
published over 3 years ago
Rankings
Dependent repos count: 34.0%
Average: 45.8%
Stargazers count: 48.3%
Forks count: 49.6%
Dependent packages count: 51.2%
Last synced:
11 months ago
Dependencies
DESCRIPTION
cran
- R >= 3.5.0 depends
- vegan >= 2.2 depends
- MASS * imports
- brglm * imports
- graphics * imports
- grid * imports
- lattice * imports
- mgcv * imports
- princurve >= 2.0.2 imports
- stats * imports
- testthat * suggests
.github/workflows/R-CMD-check.yaml
actions
- actions/checkout v4 composite
- r-lib/actions/check-r-package v2 composite
- r-lib/actions/setup-pandoc v2 composite
- r-lib/actions/setup-r v2 composite
- r-lib/actions/setup-r-dependencies v2 composite
- r-lib/actions/setup-tinytex v2 composite
.github/workflows/rev-dep-checks.yaml
actions
.github/workflows/test-coverage.yaml
actions
- actions/checkout v4 composite
- actions/upload-artifact v4 composite
- r-lib/actions/setup-r v2 composite
- r-lib/actions/setup-r-dependencies v2 composite