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Open Source Science

ape

Analysis of Phylogenetics and Evolution

https://github.com/emmanuelparadis/ape

Science Score: 36.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    2 of 9 committers (22.2%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (0.7%) to scientific vocabulary

Keywords from Contributors

phylogenetics bioinformatics phylogenetic-trees graphics trees tree-distances evolutionary-biology quartet-distance quartet comparison
Last synced: 9 months ago · JSON representation

Repository

Analysis of Phylogenetics and Evolution

Basic Info
Statistics
  • Stars: 70
  • Watchers: 7
  • Forks: 12
  • Open Issues: 7
  • Releases: 0
Created over 5 years ago · Last pushed about 1 year ago
Metadata Files
Readme Changelog License

README.md

ape

This is the development version of ape.

To know more about ape: https://emmanuelparadis.github.io

Owner

  • Name: Emmanuel Paradis
  • Login: emmanuelparadis
  • Kind: user
  • Location: Montpellier
  • Company: Institut de Recherche pour le Développement (IRD)

GitHub Events

Total
  • Issues event: 21
  • Watch event: 19
  • Issue comment event: 41
  • Push event: 13
  • Pull request event: 8
  • Fork event: 2
Last Year
  • Issues event: 21
  • Watch event: 19
  • Issue comment event: 41
  • Push event: 13
  • Pull request event: 8
  • Fork event: 2

Committers

Last synced: 11 months ago

All Time
  • Total Commits: 195
  • Total Committers: 9
  • Avg Commits per committer: 21.667
  • Development Distribution Score (DDS): 0.436
Past Year
  • Commits: 24
  • Committers: 2
  • Avg Commits per committer: 12.0
  • Development Distribution Score (DDS): 0.333
Top Committers
Name Email Commits
emmanuelparadis E****s@i****r 110
Klaus Schliep k****p@g****m 35
Martin Smith m****s@g****m 20
Martin R. Smith 1****9 12
SMITH p****8@d****k 9
xiangpin x****n@1****m 4
Maëlle Salmon m****n@y****e 3
Guangchuang Yu g****u@g****m 1
Theo Pannetier t****r@r****l 1
Committer Domains (Top 20 + Academic)
rug.nl: 1 163.com: 1 durham.ac.uk: 1 ird.fr: 1

Issues and Pull Requests

Last synced: 10 months ago

All Time
  • Total issues: 81
  • Total pull requests: 64
  • Average time to close issues: about 2 months
  • Average time to close pull requests: 18 days
  • Total issue authors: 61
  • Total pull request authors: 12
  • Average comments per issue: 3.68
  • Average comments per pull request: 1.88
  • Merged pull requests: 38
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 11
  • Pull requests: 8
  • Average time to close issues: about 1 month
  • Average time to close pull requests: 14 days
  • Issue authors: 11
  • Pull request authors: 2
  • Average comments per issue: 2.55
  • Average comments per pull request: 1.13
  • Merged pull requests: 4
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • emmanuelparadis (6)
  • ms609 (5)
  • lpipes (5)
  • KlausVigo (5)
  • HedvigS (3)
  • robertlennox (1)
  • nreid (1)
  • arcresu (1)
  • Lars-B (1)
  • bhdobrin (1)
  • Fan-iX (1)
  • RubyRedlich (1)
  • Ananya1006 (1)
  • brpetrucci (1)
  • fullertonhe (1)
Pull Request Authors
  • KlausVigo (33)
  • ms609 (15)
  • peterdunson (6)
  • TGuillerme (5)
  • Fan-iX (4)
  • xiangpin (3)
  • maelle (2)
  • fmarotta (2)
  • GuangchuangYu (2)
  • TheoPannetier (1)
  • HedvigS (1)
  • V-Z (1)
Top Labels
Issue Labels
bug (4) enhancement (3) question (2) documentation (1) issue outside ape (1) help wanted (1)
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • cran 95,090 last-month
  • Total docker downloads: 894,238
  • Total dependent packages: 394
  • Total dependent repositories: 965
  • Total versions: 104
  • Total maintainers: 1
cran.r-project.org: ape

Analyses of Phylogenetics and Evolution

  • Versions: 104
  • Dependent Packages: 394
  • Dependent Repositories: 965
  • Downloads: 95,090 Last month
  • Docker Downloads: 894,238
Rankings
Dependent packages count: 0.3%
Dependent repos count: 0.4%
Downloads: 1.5%
Average: 5.6%
Forks count: 5.9%
Stargazers count: 7.9%
Docker downloads count: 17.3%
Maintainers (1)
Emmanuel.Paradis@ird.fr
Last synced: 10 months ago

Dependencies

DESCRIPTION cran
  • R >= 3.2.0 depends
  • Rcpp >= 0.12.0 imports
  • graphics * imports
  • lattice * imports
  • methods * imports
  • nlme * imports
  • parallel * imports
  • stats * imports
  • tools * imports
  • utils * imports
  • expm * suggests
  • gee * suggests
  • igraph * suggests
  • phangorn * suggests
  • testthat >= 3.0 suggests
  • vdiffr >= 1.0 suggests
.github/workflows/R-CMD-check.yml actions
  • actions/cache v2 composite
  • actions/checkout v2 composite
  • actions/upload-artifact main composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
.github/workflows/memcheck.yml actions
  • actions/cache v2 composite
  • actions/checkout v2 composite
  • r-lib/actions/setup-pandoc master composite
  • r-lib/actions/setup-r v2 composite
.github/workflows/revdepcheck.yml actions
  • actions/cache v2 composite
  • actions/checkout v2 composite
  • actions/upload-artifact main composite
  • r-lib/actions/setup-r v2 composite