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klic

R package for KLIC: Kernel Learning Integrative Clustering

https://github.com/acabassi/klic

Science Score: 33.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ○
    codemeta.json file
  • ○
    .zenodo.json file
  • ✓
    DOI references
    Found 3 DOI reference(s) in README
  • ✓
    Academic publication links
    Links to: zenodo.org
  • ✓
    Committers with academic emails
    1 of 1 committers (100.0%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (11.1%) to scientific vocabulary

Keywords

cluster-analysis clustering coca genomics integrative-clustering kernel-methods multi-omics
Last synced: 6 months ago · JSON representation

Repository

R package for KLIC: Kernel Learning Integrative Clustering

Basic Info
Statistics
  • Stars: 5
  • Watchers: 0
  • Forks: 3
  • Open Issues: 1
  • Releases: 0
Topics
cluster-analysis clustering coca genomics integrative-clustering kernel-methods multi-omics
Created over 7 years ago · Last pushed over 5 years ago
Metadata Files
Readme License

README.md

CRAN status Build Status DOI

KLIC - Kernel Learning Integrative Clustering

Installing

In order to install this package, you will need to have Rmosek installed.

Installing Rmosek [Unix]

  • Download mosek from https://www.mosek.com/downloads/ to any folder (usually /home/<username>/bin). We will refer to it as <my-mosek-directory>.
  • Unzip it: bash cd <my-mosek-directory> tar -xvf mosektoolslinux64x86.tar.bz2
  • Add the following to your ~/.bashrc file:

bash export PATH=$PATH:<my-mosek-directory>/mosek/8/tools/platform/linux64x86/bin

  • If you are eligible apply for a free personal academic license at https://www.mosek.com/products/academic-licenses/ You will receive it (immediately) via email.
  • Put the license file in <my-mosek-directory>/mosek
  • Proceed with the installation of mosek

bash export PKG_MOSEKHOME=<my-mosek-directory>/mosek/8/tools/platform/linux64x86 export PKG_MOSEKLIB=mosek64 * Now that you have mosek installed, you can open R and install the Rmosek package with R install.packages("Rmosek", type="source", INSTALL_opts="--no-multiarch", repos="http://download.mosek.com/R/8")

Installing klic

You can install the latest released version of klic from CRAN with R install.packages("klic") or the development version from GitHub with R library(devtools) install_github("acabassi/klic") library(klic)

Owner

  • Name: Alessandra Cabassi
  • Login: acabassi
  • Kind: user
  • Location: Zürich, Switzerland
  • Company: Google

Data scientist

GitHub Events

Total
Last Year

Committers

Last synced: about 2 years ago

All Time
  • Total Commits: 125
  • Total Committers: 1
  • Avg Commits per committer: 125.0
  • Development Distribution Score (DDS): 0.0
Past Year
  • Commits: 0
  • Committers: 0
  • Avg Commits per committer: 0.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
Alessandra Cabassi a****1@c****k 125
Committer Domains (Top 20 + Academic)
cam.ac.uk: 1

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 2
  • Total pull requests: 1
  • Average time to close issues: 9 days
  • Average time to close pull requests: less than a minute
  • Total issue authors: 2
  • Total pull request authors: 1
  • Average comments per issue: 0.5
  • Average comments per pull request: 0.0
  • Merged pull requests: 1
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • fanavarro (1)
  • acabassi (1)
Pull Request Authors
  • acabassi (1)
Top Labels
Issue Labels
bug (1)
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • cran 229 last-month
  • Total dependent packages: 0
  • Total dependent repositories: 0
  • Total versions: 2
  • Total maintainers: 1
cran.r-project.org: klic

Kernel Learning Integrative Clustering

  • Versions: 2
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Downloads: 229 Last month
Rankings
Forks count: 14.9%
Stargazers count: 22.5%
Dependent packages count: 29.8%
Average: 34.6%
Dependent repos count: 35.5%
Downloads: 70.4%
Maintainers (1)
alessandra.cabassi@mrc-bsu.cam.ac.uk
Last synced: 6 months ago

Dependencies

DESCRIPTION cran
  • R >= 3.5.0 depends
  • Matrix * imports
  • RColorBrewer * imports
  • cluster * imports
  • coca * imports
  • pheatmap * imports
  • utils * imports
  • Rmosek * suggests
  • grDevices * suggests
  • graphics * suggests
  • knitr * suggests
  • markdown * suggests
  • mclust * suggests
  • tikzDevice * suggests