biotools
biotools: Tools for Biometry and Applied Statistics in Agricultural Science (R package)
Science Score: 10.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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○codemeta.json file
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○.zenodo.json file
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○DOI references
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○Academic publication links
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✓Committers with academic emails
1 of 2 committers (50.0%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (16.6%) to scientific vocabulary
Keywords
Repository
biotools: Tools for Biometry and Applied Statistics in Agricultural Science (R package)
Basic Info
- Host: GitHub
- Owner: arsilva87
- License: gpl-3.0
- Language: R
- Default Branch: master
- Homepage: https://arsilva87.github.io/biotools/
- Size: 3.02 MB
Statistics
- Stars: 2
- Watchers: 0
- Forks: 0
- Open Issues: 6
- Releases: 0
Topics
Metadata Files
README.md
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The package biotools has been developed for helping biologists, ecologists and researchers of related fields to perform optimization cluster analysis, specifically using Tocher's method, as well as to evaluate the quality of the clustering. For this last purpose, some new and standard methodologies are supplied: the cophenetic correlation coefficient, Box's M-test for equality of covariance matrices and discriminant analysis based on Mahalanobis generalized distance. These two latter can also be used upon clustering obtained with other methods, including the hierarchical ones.
Users can also find some other useful tools, such as a function for performing the well known Mantel's test and for computing its simulated power, a function that allows one to perform path analysis dealing with collinearity and a function for determining the minimum sample size in a very general way.
Getting started
You can install the released version on CRAN directly from the R console, with:
r
install.packages("biotools")
Or you can install the development version from GitHub, using:
r
devtools::install_github("arsilva87/biotools")
Afterwards, just load it and it will be ready to use.
r
library("biotools")
Check the "Articles" menu to see illustrations of some of its functions. In the "Reference" menu you can find the complete documentation and examples of all functions and data sets.
Contact
biotools is an ongoing project. Contributions are very welcome. If you have a question or have found a bug, please open an or reach out directly by e-mail: anderson.silva@ifgoiano.edu.br.
Owner
- Name: Anderson R da Silva
- Login: arsilva87
- Kind: user
- Location: Urutaí, Brazil
- Company: Goiano Federal Institute
- Repositories: 4
- Profile: https://github.com/arsilva87
Professor of Statistics; R enthusiastic.
GitHub Events
Total
- Push event: 4
Last Year
- Push event: 4
Committers
Last synced: over 2 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| arsilva87 | 4****7 | 83 |
| Anderson R da Silva | a****a@i****r | 47 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: over 2 years ago
All Time
- Total issues: 8
- Total pull requests: 0
- Average time to close issues: 12 days
- Average time to close pull requests: N/A
- Total issue authors: 4
- Total pull request authors: 0
- Average comments per issue: 1.5
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- diyadas (5)
- arsilva87 (1)
- nandp1 (1)
- karthik (1)
Pull Request Authors
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
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Total downloads:
- cran 2,350 last-month
- Total docker downloads: 21,613
- Total dependent packages: 4
- Total dependent repositories: 2
- Total versions: 12
- Total maintainers: 1
cran.r-project.org: biotools
Tools for Biometry and Applied Statistics in Agricultural Science
- Homepage: https://arsilva87.github.io/biotools/
- Documentation: http://cran.r-project.org/web/packages/biotools/biotools.pdf
- License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
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Latest release: 4.3
published 11 months ago
Rankings
Maintainers (1)
Dependencies
- MASS * depends
- boot * imports
- datasets * imports
- grDevices * imports
- graphics * imports
- stats * imports
- utils * imports
- SpatialEpi * suggests
- knitr * suggests
- lattice * suggests
- rmarkdown * suggests
- rpanel * suggests
- soilphysics * suggests
- tcltk * suggests
- tkrplot * suggests