BayesianTools
General-Purpose MCMC and SMC Samplers and Tools for Bayesian Statistics
Science Score: 33.0%
This score indicates how likely this project is to be science-related based on various indicators:
-
○CITATION.cff file
-
✓codemeta.json file
Found codemeta.json file -
○.zenodo.json file
-
○DOI references
-
✓Academic publication links
Links to: scholar.google -
✓Committers with academic emails
10 of 20 committers (50.0%) from academic institutions -
○Institutional organization owner
-
○JOSS paper metadata
-
○Scientific vocabulary similarity
Low similarity (17.2%) to scientific vocabulary
Keywords
Repository
General-Purpose MCMC and SMC Samplers and Tools for Bayesian Statistics
Basic Info
- Host: GitHub
- Owner: florianhartig
- Language: R
- Default Branch: master
- Homepage: https://cran.r-project.org/web/packages/BayesianTools/index.html
- Size: 3.85 MB
Statistics
- Stars: 127
- Watchers: 12
- Forks: 31
- Open Issues: 96
- Releases: 17
Topics
Metadata Files
README.md
BayesianTools
R package for performing Bayesian inference, including various MCMC and SMC sampling algorithms! A google scholar list of studies citing BT is here.
Getting BayesianTools
BayesianTools is on CRAN (see here). To install the latest CRAN release, type
{r}
install.packages("BayesianTools")
To get an overview about its functionality once the package is installed, run
{r}
library(BayesianTools)
?BayesianTools
vignette("BayesianTools", package="BayesianTools")
As for every R package, you can get the suggested citation via
{r}
citation("BayesianTools")
Installing the development version from GitHub
If you want to install our development version from GitHub, use
{r}
devtools::install_github(repo = "florianhartig/BayesianTools", subdir = "BayesianTools", dependencies = T, build_vignettes = T)
New developments will be done in extra branches and will be tested before merging in the developtment branch, so the developmet version should usually be usable (consider it in a beta stage), while feature branches should be considered alpha.
Status master development branch
- GH Action
Windows users: the package contains c++ code, so if you compile yourself, you need RTools installed.
Older releases
To install a specific (older) release or a branch, decide for the version number / branch that you want to install in https://github.com/florianhartig/BayesianTools/releases (version numbering corresponds to CRAN, but there may be smaller releases that were not pushed to CRAN) and run, e.g.
{r}
devtools::install_github(repo = "florianhartig/BayesianTools", subdir = "BayesianTools", ref = "v0.0.10", dependencies = T, build_vignettes = T)
with v0.0.10 replaced by the appropriate version number or branch.
Getting help
We highly welcome questions by users, so don't be shy - any questions, even if it feels "stupid", helps us to understand how we can improve the interface, documentation, or code of the package.
If you want to ask a question or report a bug, the most convenient way for us would be to provide a reproducible example via the GitHub issues
Owner
- Name: Florian Hartig
- Login: florianhartig
- Kind: user
- Location: Regensburg / Germany
- Company: @TheoreticalEcology
- Website: http://florianhartig.wordpress.com/
- Twitter: florianhartig
- Repositories: 49
- Profile: https://github.com/florianhartig
Professor for Theoretical Ecology at U Regensburg
GitHub Events
Total
- Issues event: 1
- Watch event: 7
- Issue comment event: 3
- Pull request event: 1
- Fork event: 2
Last Year
- Issues event: 1
- Watch event: 7
- Issue comment event: 3
- Pull request event: 1
- Fork event: 2
Committers
Last synced: 9 months ago
Top Committers
| Name | Commits | |
|---|---|---|
| Florian Hartig | f****g | 213 |
| TankredO | T****t@h****e | 116 |
| MaximilianPi | 2****i | 48 |
| florianhartig | f****n@p****e | 43 |
| TahminaMojumder | T****r@s****e | 25 |
| stefan-paul | s****1@w****e | 23 |
| florianhartig | f****n@U****x | 9 |
| Florian Hartig | f****n@F****l | 6 |
| RobertBosek | r****k@s****e | 5 |
| rajoma-02 | 7****2 | 5 |
| florianhartig | f****n@U****e | 3 |
| olivroy | 5****y | 3 |
| florianhartig | f****n@s****e | 2 |
| Florian Hartig | f****n@s****e | 2 |
| Florian Hartig | f****n@F****x | 2 |
| Florian Hartig | f****n@r****e | 1 |
| Alexandre Génin | a****n@u****r | 1 |
| Florian Hartig | f****n@r****e | 1 |
| Florian Hartig | f****n@r****e | 1 |
| Florian Hartig | f****n@r****e | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 6 months ago
All Time
- Total issues: 78
- Total pull requests: 23
- Average time to close issues: 2 months
- Average time to close pull requests: about 2 months
- Total issue authors: 30
- Total pull request authors: 4
- Average comments per issue: 2.21
- Average comments per pull request: 1.04
- Merged pull requests: 10
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 3
- Pull requests: 2
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 2
- Pull request authors: 1
- Average comments per issue: 0.0
- Average comments per pull request: 0.0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- florianhartig (36)
- twest820 (7)
- TahminaMojumder (3)
- sbuis (3)
- fkrauer (3)
- FelixNoessler (2)
- wwbgroup (1)
- dejuncai (1)
- aejensen (1)
- hosseinkavianih (1)
- carran (1)
- Catarinaxa (1)
- NataliaNash (1)
- stefan-paul (1)
- naodaihuang (1)
Pull Request Authors
- TahminaMojumder (13)
- florianhartig (7)
- olivroy (4)
- FelixNoessler (2)
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
-
Total downloads:
- cran 947 last-month
- Total docker downloads: 82,643
- Total dependent packages: 7
- Total dependent repositories: 33
- Total versions: 9
- Total maintainers: 1
cran.r-project.org: BayesianTools
General-Purpose MCMC and SMC Samplers and Tools for Bayesian Statistics
- Homepage: https://github.com/florianhartig/BayesianTools
- Documentation: http://cran.r-project.org/web/packages/BayesianTools/BayesianTools.pdf
- License: GPL-3
-
Latest release: 0.1.8
published about 3 years ago
Rankings
Maintainers (1)
Dependencies
- actions/cache v2 composite
- actions/checkout v3 composite
- actions/upload-artifact main composite
- r-lib/actions/setup-pandoc v2 composite
- r-lib/actions/setup-r v2 composite
- R >= 3.1.2 depends
- DHARMa * imports
- IDPmisc * imports
- MASS * imports
- Matrix * imports
- Rcpp >= 0.12.12 imports
- bridgesampling * imports
- coda * imports
- ellipse * imports
- emulator * imports
- gap * imports
- graphics * imports
- msm * imports
- mvtnorm * imports
- numDeriv * imports
- stats * imports
- tmvtnorm * imports
- utils * imports
- DEoptim * suggests
- knitr * suggests
- lhs * suggests
- rmarkdown * suggests
- roxygen2 * suggests
- sensitivity * suggests
- testthat * suggests