Science Score: 13.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
○.zenodo.json file
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○DOI references
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○Academic publication links
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○Committers with academic emails
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (12.5%) to scientific vocabulary
Keywords
Repository
Create and Manipulate BioCompute Objects
Basic Info
- Host: GitHub
- Owner: sbg
- Language: R
- Default Branch: master
- Homepage: https://sbg.github.io/biocompute/
- Size: 451 KB
Statistics
- Stars: 3
- Watchers: 3
- Forks: 3
- Open Issues: 1
- Releases: 10
Topics
Metadata Files
README.md
biocompute
Seven Bridges implementation of the BioCompute Object (BCO) specification. Offers the capabilities to compose, validate, and convert BioCompute Objects with R.
Users can encode information in data frames, and compose BioCompute Objects (BCO) from the domains defined by the standard. A checksum validator and a JSON schema validator are provided. This package also supports exporting BioCompute Objects as JSON, PDF, HTML, or Word documents, and exporting to cloud-based platforms.
Check out the introduction vignette or the case study vignette to get started.
To see the library used in a real use case, refer to the BCO App repository.
Installation
To download and install biocompute from CRAN:
r
install.packages("biocompute")
Or try the development version on GitHub:
```r
install.packages("remotes")
remotes::install_github("sbg/biocompute") ```
Note: the code in this repository is the most up to date, and this version is not available for install in CRAN. If you are looking for a version of the library that is more consistent with the BCO standard, it is recommended you install the development version from this repository.
Copyright
© 2021 Seven Bridges Genomics, Inc. All rights reserved.
This project is licensed under the GNU Affero General Public License v3.
Owner
- Name: Seven Bridges
- Login: sbg
- Kind: organization
- Location: Cambridge, MA
- Website: https://sevenbridges.com
- Repositories: 16
- Profile: https://github.com/sbg
GitHub Events
Total
Last Year
Committers
Last synced: about 2 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| Jeffrey Grover | j****r@s****m | 27 |
| Nan Xiao | me@n****e | 20 |
| Soner Koc | s****2@g****m | 5 |
| Nan Xiao | n****o@s****m | 4 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 6 months ago
All Time
- Total issues: 1
- Total pull requests: 3
- Average time to close issues: N/A
- Average time to close pull requests: 10 minutes
- Total issue authors: 1
- Total pull request authors: 2
- Average comments per issue: 0.0
- Average comments per pull request: 0.0
- Merged pull requests: 3
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- groverj3 (1)
Pull Request Authors
- groverj3 (2)
- seacevedo (2)
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
-
Total downloads:
- cran 312 last-month
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 5
- Total maintainers: 1
cran.r-project.org: biocompute
Create and Manipulate BioCompute Objects
- Homepage: https://sbg.github.io/biocompute/
- Documentation: http://cran.r-project.org/web/packages/biocompute/biocompute.pdf
- License: AGPL-3
-
Latest release: 1.1.1
published almost 4 years ago
Rankings
Maintainers (1)
Dependencies
- cli * imports
- crayon * imports
- curl * imports
- digest * imports
- httr * imports
- jsonlite * imports
- jsonvalidate * imports
- magrittr * imports
- methods * imports
- rmarkdown * imports
- stringr * imports
- uuid * imports
- yaml * imports
- knitr * suggests