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BIOMASS

https://github.com/umr-amap/biomass

Science Score: 49.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 4 DOI reference(s) in README
  • ✓
    Academic publication links
    Links to: wiley.com
  • ○
    Committers with academic emails
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (9.7%) to scientific vocabulary
Last synced: 7 months ago · JSON representation

Repository

Basic Info
Statistics
  • Stars: 30
  • Watchers: 7
  • Forks: 19
  • Open Issues: 10
  • Releases: 3
Created over 7 years ago · Last pushed 7 months ago
Metadata Files
Readme Changelog

README.md

BIOMASS

test-coverage.yaml R-CMD-check pkgdown CRAN/METACRAN Version

The package

The BIOMASS package allows users to estimate above ground biomass/carbon and its uncertainty in tropical forests.

The main implemented steps are as follows :

  1. retrieving and correcting tree taxonomy;
  2. estimating wood density and its uncertainty;
  3. building height-diameter models;
  4. estimating above ground biomass/carbon at stand level with associated uncertainty;
  5. managing tree and plot coordinates.

For more information, see Réjou-Méchain et al. (2017)

Install BIOMASS

The latest released version from CRAN:

r install.packages("BIOMASS")

The latest version from Github (in development):

r install.packages("remotes") remotes::install_github('umr-amap/BIOMASS')

To use it :

r library("BIOMASS")

Tutorials/Vignettes

Two vignettes are available in the 'Articles' section of the following page : https://umr-amap.github.io/BIOMASS/index.html

Citation

Please cite this package as:

Réjou-Méchain M, Tanguy A, Piponiot C, Chave J, Herault B (2017). “BIOMASS : an R package for estimating above-ground biomass and its uncertainty in tropical forests.” Methods in Ecology and Evolution, 8(9). ISSN 2041210X, doi:10.1111/2041-210X.12753.

Or you can also run

r citation("BIOMASS")

Owner

  • Name: UMR AMAP
  • Login: umr-amap
  • Kind: organization
  • Email: amap-dev@cirad.fr
  • Location: Montpellier, France

Botanique et modélisation de l'architecture des plantes et des végétations

GitHub Events

Total
  • Create event: 20
  • Commit comment event: 1
  • Release event: 1
  • Issues event: 13
  • Watch event: 8
  • Delete event: 26
  • Issue comment event: 9
  • Push event: 154
  • Pull request review event: 4
  • Pull request review comment event: 3
  • Pull request event: 40
  • Fork event: 1
Last Year
  • Create event: 20
  • Commit comment event: 1
  • Release event: 1
  • Issues event: 13
  • Watch event: 8
  • Delete event: 26
  • Issue comment event: 9
  • Push event: 154
  • Pull request review event: 4
  • Pull request review comment event: 3
  • Pull request event: 40
  • Fork event: 1

Committers

Last synced: 7 months ago

All Time
  • Total Commits: 717
  • Total Committers: 10
  • Avg Commits per committer: 71.7
  • Development Distribution Score (DDS): 0.456
Past Year
  • Commits: 186
  • Committers: 4
  • Avg Commits per committer: 46.5
  • Development Distribution Score (DDS): 0.183
Top Committers
Name Email Commits
Arthur Péré a****e@f****r 390
ArthurBailly a****y@f****r 152
Maxime RM m****u@g****m 76
lamonica-d d****a@g****m 50
gcornu c****g@c****r 15
Eric Marcon e****n@a****r 11
Guillaume Cornu g****u@c****r 11
billy u****7@f****r 8
Mauro Lepore m****e@g****m 3
Philippe Verley p****y@i****r 1
Committer Domains (Top 20 + Academic)
free.fr: 3 cirad.fr: 2 ird.fr: 1 agroparistech.fr: 1

Issues and Pull Requests

Last synced: 7 months ago

All Time
  • Total issues: 39
  • Total pull requests: 60
  • Average time to close issues: 8 months
  • Average time to close pull requests: about 1 month
  • Total issue authors: 16
  • Total pull request authors: 7
  • Average comments per issue: 1.67
  • Average comments per pull request: 0.18
  • Merged pull requests: 51
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 9
  • Pull requests: 49
  • Average time to close issues: 7 days
  • Average time to close pull requests: 4 days
  • Issue authors: 4
  • Pull request authors: 5
  • Average comments per issue: 0.56
  • Average comments per pull request: 0.14
  • Merged pull requests: 40
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • ArthurPERE (11)
  • ArthurBailly (6)
  • billy34 (5)
  • MaximeRM (5)
  • AbhorWrent (1)
  • CoenvdBrand (1)
  • AEMuelbert (1)
  • rsbivand (1)
  • PPierre22 (1)
  • FabioMostacato (1)
  • fabeit (1)
  • NicoLabriere (1)
  • mlouwzoo (1)
  • maurolepore (1)
  • AragonAmazon (1)
Pull Request Authors
  • ArthurBailly (42)
  • billy34 (7)
  • EricMarcon (3)
  • maurolepore (3)
  • lamonica-d (2)
  • stephenhagen (2)
  • johngodlee (1)
Top Labels
Issue Labels
enhancement (9) bug (6) wontfix (2)
Pull Request Labels
bug (1) enhancement (1)

Packages

  • Total packages: 3
  • Total downloads:
    • cran 842 last-month
  • Total dependent packages: 0
    (may contain duplicates)
  • Total dependent repositories: 5
    (may contain duplicates)
  • Total versions: 25
  • Total maintainers: 1
proxy.golang.org: github.com/umr-amap/BIOMASS
  • Versions: 3
  • Dependent Packages: 0
  • Dependent Repositories: 0
Rankings
Dependent packages count: 5.4%
Average: 5.6%
Dependent repos count: 5.8%
Last synced: 7 months ago
proxy.golang.org: github.com/umr-amap/biomass
  • Versions: 3
  • Dependent Packages: 0
  • Dependent Repositories: 0
Rankings
Dependent packages count: 5.4%
Average: 5.6%
Dependent repos count: 5.8%
Last synced: 7 months ago
cran.r-project.org: BIOMASS

Estimating Aboveground Biomass and Its Uncertainty in Tropical Forests

  • Versions: 19
  • Dependent Packages: 0
  • Dependent Repositories: 5
  • Downloads: 842 Last month
Rankings
Forks count: 5.2%
Downloads: 11.9%
Stargazers count: 12.2%
Dependent repos count: 13.2%
Average: 14.1%
Dependent packages count: 27.9%
Maintainers (1)
dominique.lamonica@ird.fr
Last synced: 7 months ago

Dependencies

DESCRIPTION cran
  • R >= 3.6 depends
  • data.table >= 1.9.8 imports
  • graphics * imports
  • jsonlite * imports
  • methods * imports
  • minpack.lm * imports
  • proj4 * imports
  • rappdirs * imports
  • raster * imports
  • sp * imports
  • stats * imports
  • utils * imports
  • curl * suggests
  • httr * suggests
  • knitr * suggests
  • prettydoc * suggests
  • rmarkdown * suggests
  • sf * suggests
  • testthat * suggests
.github/workflows/check-standard.yml actions
  • actions/checkout v4 composite
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  • r-lib/actions/setup-pandoc v2 composite
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  • r-lib/actions/setup-r-dependencies v2 composite
.github/workflows/pkgdown.yml actions
  • JamesIves/github-pages-deploy-action v4.4.1 composite
  • actions/checkout v4 composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-r-dependencies v2 composite
.github/workflows/rhub.yaml actions
  • r-hub/actions/checkout v1 composite
  • r-hub/actions/platform-info v1 composite
  • r-hub/actions/run-check v1 composite
  • r-hub/actions/setup v1 composite
  • r-hub/actions/setup-deps v1 composite
  • r-hub/actions/setup-r v1 composite
.github/workflows/test-coverage.yml actions
  • actions/checkout v4 composite
  • actions/upload-artifact v4 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-r-dependencies v2 composite
.github/workflows/webr-pkgdown-build-and-deploy.yml actions
  • actions/checkout v4 composite
  • actions/checkout v3 composite
  • actions/deploy-pages v4 composite
  • actions/download-artifact v4 composite
  • actions/upload-artifact v4 composite
  • actions/upload-pages-artifact v3 composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-r-dependencies v2 composite
  • r-wasm/actions/build-rwasm v1 composite