blockForest
Random Forests for Blocks of Clinical and Omics Covariate Data
Science Score: 23.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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○codemeta.json file
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○.zenodo.json file
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✓DOI references
Found 6 DOI reference(s) in README -
○Academic publication links
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✓Committers with academic emails
1 of 3 committers (33.3%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (4.0%) to scientific vocabulary
Repository
Random Forests for Blocks of Clinical and Omics Covariate Data
Basic Info
- Host: GitHub
- Owner: bips-hb
- Language: C++
- Default Branch: master
- Size: 245 KB
Statistics
- Stars: 7
- Watchers: 4
- Forks: 4
- Open Issues: 1
- Releases: 0
Metadata Files
README.md
blockForest: Random Forests for Blocks of Clinical and Omics Covariate Data
Roman Hornung, Marvin N. Wright
Description
A random forest variant suitable for the prediction of binary, survival and continuous outcomes using multi-omics data, i.e., data for which measurements of different types of omics data and/or clinical data for each patient exist. Examples include gene expression measurements, methylation measurements, and copy number variation measurements.
References
- Hornung, R. & Wright, M. N. (2019). Block Forests: random forests for blocks of clinical and omics covariate data. BMC Bioinformatics 20:358. https://doi.org/10.1186/s12859-019-2942-y.
- Wright, M. N. & Ziegler, A. (2017). ranger: A fast implementation of random forests for high dimensional data in C++ and R. J Stat Softw 77:1-17. https://doi.org/10.18637/jss.v077.i01.
- Breiman, L. (2001). Random forests. Mach Learn, 45:5-32. https://doi.org/10.1023/A:1010933404324.
Owner
- Name: BIPS
- Login: bips-hb
- Kind: organization
- Location: Bremen, Germany
- Website: https://www.bips-institut.de
- Repositories: 38
- Profile: https://github.com/bips-hb
Leibniz Institute for Prevention Research and Epidemiology
GitHub Events
Total
Last Year
Committers
Last synced: over 2 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| Marvin Wright | g****b@w****e | 51 |
| RomanHornung | h****g@i****e | 1 |
| Katrin Leinweber | k****i@p****e | 1 |
Committer Domains (Top 20 + Academic)
Packages
- Total packages: 1
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Total downloads:
- cran 514 last-month
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 6
- Total maintainers: 1
cran.r-project.org: blockForest
Block Forests: Random Forests for Blocks of Clinical and Omics Covariate Data
- Homepage: https://github.com/bips-hb/blockForest
- Documentation: http://cran.r-project.org/web/packages/blockForest/blockForest.pdf
- License: GPL-3
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Latest release: 0.2.6
published over 3 years ago
Rankings
Maintainers (1)
Dependencies
- R >= 3.1 depends
- Matrix * imports
- Rcpp >= 0.11.2 imports
- methods * imports
- survival * imports
- testthat * suggests
- actions/checkout v2 composite
- r-lib/actions/check-r-package v2 composite
- r-lib/actions/setup-pandoc v2 composite
- r-lib/actions/setup-r v2 composite
- r-lib/actions/setup-r-dependencies v2 composite