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camtrapR

R package for camera trap data management

https://github.com/jniedballa/camtrapr

Science Score: 49.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 4 DOI reference(s) in README
  • ✓
    Academic publication links
    Links to: wiley.com
  • ○
    Committers with academic emails
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (20.7%) to scientific vocabulary

Keywords

occupancy-modeling rstats spatial-capture-recapture wildlife
Last synced: 7 months ago · JSON representation

Repository

R package for camera trap data management

Basic Info
Statistics
  • Stars: 37
  • Watchers: 2
  • Forks: 5
  • Open Issues: 12
  • Releases: 1
Topics
occupancy-modeling rstats spatial-capture-recapture wildlife
Created over 7 years ago · Last pushed 7 months ago
Metadata Files
Readme Changelog Funding

README.Rmd 

---
output: github_document
---



```{r, include = FALSE}
knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>"
)
```

# camtrapR


[![CRAN status](https://www.r-pkg.org/badges/version/camtrapR)](https://CRAN.R-project.org/package=camtrapR)
[![](http://cranlogs.r-pkg.org/badges/camtrapR)](https://cran.r-project.org/package=camtrapR)



camtrapR is a package for camera trap data management in R.


## Installation

You can install the release version of camtrapR from CRAN:

```{r, eval = FALSE}
install.packages("camtrapR")
```

or the latest GitHub version (containing recent changes and new features) via: 

```{r, eval = FALSE}
# install.packages("remotes")
# install.packages("R.rsp")
remotes::install_github("jniedballa/camtrapR", build_vignettes = TRUE)
```

For installation from GitHub make sure package `R.rsp` is available. `build_vignettes = TRUE` is necessary since v 2.1.1. due to the new static vignettes.

You can also install a previous version (e.g. if a recent update broke the code you need to run urgently) via:

```{r, eval = FALSE}
remotes::install_version(package = "camtrapR", version = "2.0.3")
```

## Exiftool

Numerous important camtrapR functions read EXIF metadata from JPG images (and videos). This is done via Exiftool, a free and open-source sofware tool developed by Phil Harvey and available for Windows, MacOS and Linux.

To make full use of camtrapR, you will need Exiftool on your system. You can download it from the [Exiftool homepage](https://exiftool.org/). Please follow the installation instruction in vignette 1 and the Exiftool website.

You may not need Exiftool if you do not work with image files, but only use camtrapR to create input for occupancy or spatial capture-recapture models from existing record tables.

## Help and Support

### Google Group

There is a [Google Group](https://groups.google.com/forum/#!forum/camtrapr) for all questions and problems regarding camtrapR. Please feel free to join the discussion there.

### GitHub issues

Alternatively, you can report bugs and problems as issues on GitHub [(here)](https://github.com/jniedballa/camtrapR/issues).

## Further reading

See the [Article in Methods in Ecology and Evolution](https://besjournals.onlinelibrary.wiley.com/doi/full/10.1111/2041-210X.12600) for an overview of the package. The five vignettes provide examples for the entire workflow.

## Citation

To cite camtrapR, please use:

Jürgen Niedballa, Rahel Sollmann, Alexandre Courtiol, Andreas Wilting (2016). camtrapR: an R package for efficient
  camera trap data management. Methods in Ecology and Evolution 7(12), 1457-1462, https://doi.org/10.1111/2041-210X.12600, URL: https://besjournals.onlinelibrary.wiley.com/doi/full/10.1111/2041-210X.12600

or see `citation("camtrapR")`

Owner

  • Name: Jürgen Niedballa
  • Login: jniedballa
  • Kind: user

GitHub Events

Total
  • Issues event: 2
  • Watch event: 6
  • Issue comment event: 7
  • Push event: 33
Last Year
  • Issues event: 2
  • Watch event: 6
  • Issue comment event: 7
  • Push event: 33

Committers

Last synced: 10 months ago

All Time
  • Total Commits: 615
  • Total Committers: 2
  • Avg Commits per committer: 307.5
  • Development Distribution Score (DDS): 0.002
Past Year
  • Commits: 1
  • Committers: 1
  • Avg Commits per committer: 1.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
jniedballa c****r@g****m 614
Olly Griffin 3****g 1

Issues and Pull Requests

Last synced: 7 months ago

All Time
  • Total issues: 29
  • Total pull requests: 2
  • Average time to close issues: about 1 year
  • Average time to close pull requests: 14 days
  • Total issue authors: 9
  • Total pull request authors: 2
  • Average comments per issue: 1.55
  • Average comments per pull request: 0.5
  • Merged pull requests: 2
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 2
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 1
  • Pull request authors: 0
  • Average comments per issue: 0.0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • jniedballa (18)
  • damianooldoni (4)
  • bjbarrett (1)
  • wsyxbcl (1)
  • git-og (1)
  • LisaNicvert (1)
  • rsbivand (1)
  • ljakob12 (1)
  • jimcasaer (1)
Pull Request Authors
  • git-og (1)
  • jniedballa (1)
Top Labels
Issue Labels
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • cran 1,162 last-month
  • Total dependent packages: 0
  • Total dependent repositories: 2
  • Total versions: 26
  • Total maintainers: 1
cran.r-project.org: camtrapR

Camera Trap Data Management and Preparation of Occupancy and Spatial Capture-Recapture Analyses

  • Versions: 26
  • Dependent Packages: 0
  • Dependent Repositories: 2
  • Downloads: 1,162 Last month
Rankings
Stargazers count: 10.2%
Forks count: 10.8%
Downloads: 13.0%
Average: 16.3%
Dependent repos count: 19.2%
Dependent packages count: 28.7%
Maintainers (1)
camtrapr@gmail.com
Last synced: 7 months ago

Dependencies

DESCRIPTION cran
  • R >= 3.1.0 depends
  • data.table * imports
  • generics * imports
  • ggplot2 * imports
  • lubridate * imports
  • methods * imports
  • overlap * imports
  • secr * imports
  • sf * imports
  • sp * imports
  • R.rsp * suggests
  • RSQLite * suggests
  • coda * suggests
  • knitr * suggests
  • lattice * suggests
  • magick * suggests
  • nimble * suggests
  • nimbleEcology * suggests
  • raster * suggests
  • reshape2 * suggests
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  • ritis * suggests
  • rjags * suggests
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