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Rtrack

Analysis of spatial tracking data and strategy classification.

https://github.com/rupertoverall/rtrack

Science Score: 26.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Committers with academic emails
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (12.7%) to scientific vocabulary
Last synced: 11 months ago · JSON representation

Repository

Analysis of spatial tracking data and strategy classification.

Basic Info
  • Host: GitHub
  • Owner: rupertoverall
  • Language: R
  • Default Branch: master
  • Size: 31.9 MB
Statistics
  • Stars: 6
  • Watchers: 3
  • Forks: 3
  • Open Issues: 0
  • Releases: 5
Created almost 7 years ago · Last pushed 11 months ago
Metadata Files
Readme Changelog

README.md

Rtrack

The Rtrack package

Rtrack is a package to process raw spatial tracking data (such as from the Morris water maze or open field tests) and calculate behavioural strategies. The strategy analysis is performed in a parameter-free manner using pre-trained machine learning models. This makes analysis both fast and reproducible. In addition, the package includes several plotting functions, tools to aid advanced analysis, and export functions for results and raw data.

The export of raw data in a standardised format allows complete experiments to be archived and shared.

Install

From CRAN: The package is available from the CRAN repository. To install it (currently version 2.0.4), run the following line in R.

r install.packages("Rtrack") From github: This github repository contains the development version with the latest features and bug fixes. To install this version (2.0.4), run the following line in R (you will need to have the remotes package already installed).

r remotes::install_github("rupertoverall/Rtrack")

Getting started

To get started using Rtrack, it is recommended to work through the tutorials

Owner

  • Login: rupertoverall
  • Kind: user

GitHub Events

Total
  • Issues event: 1
  • Issue comment event: 3
  • Push event: 2
  • Pull request event: 1
  • Fork event: 1
Last Year
  • Issues event: 1
  • Issue comment event: 3
  • Push event: 2
  • Pull request event: 1
  • Fork event: 1

Committers

Last synced: over 2 years ago

All Time
  • Total Commits: 88
  • Total Committers: 2
  • Avg Commits per committer: 44.0
  • Development Distribution Score (DDS): 0.364
Past Year
  • Commits: 9
  • Committers: 1
  • Avg Commits per committer: 9.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
rupertoverall m****l@r****t 56
rupertoverall 3****l 32
Committer Domains (Top 20 + Academic)
rupertoverall.net: 1

Issues and Pull Requests

Last synced: 11 months ago

All Time
  • Total issues: 7
  • Total pull requests: 2
  • Average time to close issues: 7 months
  • Average time to close pull requests: 5 months
  • Total issue authors: 7
  • Total pull request authors: 1
  • Average comments per issue: 3.29
  • Average comments per pull request: 4.0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 2
  • Average time to close issues: N/A
  • Average time to close pull requests: 5 months
  • Issue authors: 0
  • Pull request authors: 1
  • Average comments per issue: 0
  • Average comments per pull request: 4.0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • nicoleschwab (1)
  • ksaxen (1)
  • kmh005 (1)
  • rsbivand (1)
  • Habedank (1)
  • mamut343 (1)
  • brendanmillerj (1)
Pull Request Authors
  • davorvr (3)
Top Labels
Issue Labels
Confirmed bug (1) Needs documentation fix (1)
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • cran 334 last-month
  • Total dependent packages: 0
  • Total dependent repositories: 0
  • Total versions: 7
  • Total maintainers: 1
cran.r-project.org: Rtrack

Spatial Navigation Strategy Analysis

  • Versions: 7
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Downloads: 334 Last month
Rankings
Forks count: 21.9%
Stargazers count: 24.2%
Dependent packages count: 29.8%
Average: 31.5%
Dependent repos count: 35.5%
Downloads: 46.4%
Maintainers (1)
rtrack@rupertoverall.net
Last synced: 11 months ago

Dependencies

DESCRIPTION cran
  • R >= 2.10 depends
  • KernSmooth * imports
  • crayon * imports
  • grDevices * imports
  • graphics * imports
  • methods * imports
  • openxlsx * imports
  • parallel * imports
  • pbapply * imports
  • randomForest * imports
  • raster * imports
  • readxl * imports
  • rgeos * imports
  • rjson * imports
  • sp * imports
  • stats * imports
  • tools * imports
  • utils * imports
  • knitr * suggests
  • rmarkdown * suggests