OncoScore
OncoScore is a tool to measure the association of genes to cancer based on citation frequency in biomedical literature. The manuscript of the method is published on Scientific Reports and available at http://www.nature.com/articles/srep46290.
Science Score: 23.0%
This score indicates how likely this project is to be science-related based on various indicators:
-
○CITATION.cff file
-
✓codemeta.json file
Found codemeta.json file -
○.zenodo.json file
-
○DOI references
-
✓Academic publication links
Links to: nature.com -
○Committers with academic emails
-
○Institutional organization owner
-
○JOSS paper metadata
-
○Scientific vocabulary similarity
Low similarity (3.3%) to scientific vocabulary
Repository
OncoScore is a tool to measure the association of genes to cancer based on citation frequency in biomedical literature. The manuscript of the method is published on Scientific Reports and available at http://www.nature.com/articles/srep46290.
Basic Info
- Host: GitHub
- Owner: danro9685
- License: gpl-3.0
- Language: R
- Default Branch: master
- Homepage: https://danro9685.github.io/OncoScore/
- Size: 2.82 MB
Statistics
- Stars: 5
- Watchers: 2
- Forks: 2
- Open Issues: 0
- Releases: 19
Metadata Files
README.md
OncoScore
| Branch | Status |
| --- | --- |
| master | 
|
| development | 
|
OncoScore is a tool to measure the association of genes to cancer based on citation frequencies in biomedical literature. The score is evaluated from PubMed literature by dynamically updatable web queries.
The manuscript of the method is published on Scientific Reports at http://www.nature.com/articles/srep46290.
Owner
- Name: Daniele Ramazzotti
- Login: danro9685
- Kind: user
- Location: Milano, Italy
- Company: University of Milano-Bicocca, Milano, Italy
- Website: https://sites.google.com/site/danieleramazzotti1/
- Repositories: 5
- Profile: https://github.com/danro9685
Department of Medicine and Surgery, University of Milano-Bicocca, Milano, Italy
GitHub Events
Total
- Create event: 2
- Issues event: 2
- Release event: 2
- Issue comment event: 2
- Push event: 10
Last Year
- Create event: 2
- Issues event: 2
- Release event: 2
- Issue comment event: 2
- Push event: 10
Committers
Last synced: over 2 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| danro9685 | d****i@y****m | 184 |
| luca-dex | l****o@g****m | 62 |
Issues and Pull Requests
Last synced: 11 months ago
All Time
- Total issues: 13
- Total pull requests: 9
- Average time to close issues: 26 days
- Average time to close pull requests: 21 minutes
- Total issue authors: 7
- Total pull request authors: 1
- Average comments per issue: 1.31
- Average comments per pull request: 0.0
- Merged pull requests: 9
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 1
- Pull requests: 0
- Average time to close issues: about 23 hours
- Average time to close pull requests: N/A
- Issue authors: 1
- Pull request authors: 0
- Average comments per issue: 1.0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- danro9685 (5)
- luca-dex (3)
- sigven (1)
- Jumanah-y (1)
- robinjugas (1)
- Debashis876 (1)
- shucon (1)
Pull Request Authors
- luca-dex (9)
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
-
Total downloads:
- bioconductor 15,611 total
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 5
- Total maintainers: 1
bioconductor.org: OncoScore
A tool to identify potentially oncogenic genes
- Homepage: https://github.com/danro9685/OncoScore
- Documentation: https://bioconductor.org/packages/release/bioc/vignettes/OncoScore/inst/doc/OncoScore.pdf
- License: file LICENSE
-
Latest release: 1.36.0
published about 1 year ago
Rankings
Maintainers (1)
Dependencies
- R >= 4.1.0 depends
- biomaRt * imports
- grDevices * imports
- graphics * imports
- methods * imports
- utils * imports
- BiocGenerics * suggests
- BiocStyle * suggests
- knitr * suggests
- testthat * suggests
- actions/cache v2 composite
- actions/checkout v2 composite
- actions/upload-artifact v2 composite
- r-lib/actions/setup-pandoc v2 composite
- r-lib/actions/setup-r v2 composite
- r-lib/actions/setup-tinytex v2 composite
- actions/cache v2 composite
- actions/checkout v2 composite
- actions/upload-artifact v2 composite
- r-lib/actions/setup-pandoc v2 composite
- r-lib/actions/setup-r v2 composite
- r-lib/actions/setup-tinytex v2 composite