cati

Communities Assembly by Traits: Individuals and beyond

https://github.com/adrientaudiere/cati

Science Score: 46.0%

This score indicates how likely this project is to be science-related based on various indicators:

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CITATION.cff file
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codemeta.json file
Found codemeta.json file
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.zenodo.json file
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DOI references
Found 2 DOI reference(s) in README
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Academic publication links
Links to: wiley.com, zenodo.org
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Committers with academic emails
1 of 6 committers (16.7%) from academic institutions
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Institutional organization owner
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JOSS paper metadata
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Scientific vocabulary similarity
Low similarity (9.3%) to scientific vocabulary

Last synced: 7 months ago · JSON representation

Repository

Communities Assembly by Traits: Individuals and beyond

Basic Info

Host: GitHub
Owner: adrientaudiere
License: gpl-3.0
Language: R
Default Branch: master
Homepage: http://adrientaudiere.github.io/cati/
Size: 244 MB

Statistics

Stars: 12
Watchers: 3
Forks: 7
Open Issues: 0
Releases: 2

Created almost 12 years ago · Last pushed over 1 year ago

Metadata Files

Readme License

README.md

cati: Communities Assembly by Traits: Individuals and beyond

A R package to detect communities assembly processes by functionnal traits

The package is described in Ecography: cati: an R package using functional traits to detect and quantify multi-level community assembly processes.

Install the latest versions of all dependencies from CRAN:

r install.packages(c("devtools", "e1071", "mice", "rasterVis", "hypervolume", "FD", "geometry", "vegan", "nlme", "ade4", "ape"))

Install cati's current development version from Github:

r devtools::install_github("adrientaudiere/cati")

Install cati's cran version:

r install.packages("cati")

Attach the package and you are ready to start:

r library(cati)

There's a tutorial which illustrate the cati package using Darwin finches data.

How to cite?

"Taudiere, A. and Violle, C. (2016), cati: an R package using functional traits to detect and quantify multi-level community assembly processes. Ecography. doi: 10.1111/ecog.01433"

Owner

Name: Adrien Taudiere
Login: adrientaudiere
Kind: user
Company: IdEst

Website: https://adrientaudiere.com
Repositories: 9
Profile: https://github.com/adrientaudiere

Professional website: https://adrientaudiere.com

GitHub Events

Total

Create event: 1
Release event: 1
Issues event: 3
Watch event: 1
Issue comment event: 4
Push event: 3

Last Year

Create event: 1
Release event: 1
Issues event: 3
Watch event: 1
Issue comment event: 4
Push event: 3

Committers

Last synced: 9 months ago

All Time

Total Commits: 234
Total Committers: 6
Avg Commits per committer: 39.0
Development Distribution Score (DDS): 0.419

Past Year

Commits: 4
Committers: 1
Avg Commits per committer: 4.0
Development Distribution Score (DDS): 0.0

Top Committers

Name	Email	Commits
Adrien Taudiere	a**e@c**r	136
Taudiere	t**n@g**m	47
adrientaudiere	a**5@h**m	31
Adrien Taudiere	6****e	16
Adrien Taudiere	t**e@n**r	3
Matthias Grenié	m**e@e**r	1

Committer Domains (Top 20 + Academic)

ens-lyon.fr: 1 newcefe.newage.fr: 1 cefe.cnrs.fr: 1

Issues and Pull Requests

Last synced: 8 months ago

All Time

Total issues: 7
Total pull requests: 2
Average time to close issues: 8 months
Average time to close pull requests: almost 2 years
Total issue authors: 6
Total pull request authors: 2
Average comments per issue: 2.29
Average comments per pull request: 0.5
Merged pull requests: 2
Bot issues: 0
Bot pull requests: 0

Past Year

Issues: 3
Pull requests: 0
Average time to close issues: 24 days
Average time to close pull requests: N/A
Issue authors: 2
Pull request authors: 0
Average comments per issue: 2.0
Average comments per pull request: 0
Merged pull requests: 0
Bot issues: 0
Bot pull requests: 0

View more stats

Top Authors

Issue Authors

leandromenezess (2)
apportela (1)
ingolfkuehn (1)
diogoprov (1)
Rekyt (1)
hoganhaben (1)

Pull Request Authors

Rekyt (1)
adrientaudiere (1)

Top Labels

Issue Labels

Pull Request Labels

Packages

Total packages: 1
Total downloads:
- cran 443 last-month
Total docker downloads: 1,419

Total dependent packages: 0
Total dependent repositories: 0
Total versions: 7
Total maintainers: 1

cran.r-project.org: cati

Community Assembly by Traits: Individuals and Beyond

Homepage: https://github.com/adrientaudiere/cati
Documentation: http://cran.r-project.org/web/packages/cati/cati.pdf
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
Latest release: 0.99.4
published about 4 years ago

Versions: 7
Dependent Packages: 0
Dependent Repositories: 0
Downloads: 443 Last month
Docker Downloads: 1,419

Rankings

Forks count: 9.1%

Stargazers count: 17.0%

Average: 24.2%

Downloads: 29.7%

Dependent packages count: 29.8%

Dependent repos count: 35.5%

Maintainers (1)

adrien.taudiere@tutanota.com

Last synced: 8 months ago

Dependencies

.github/workflows/pkgdown.yaml actions

JamesIves/github-pages-deploy-action v4.5.0 composite
actions/checkout v4 composite
r-lib/actions/setup-pandoc v2 composite
r-lib/actions/setup-r v2 composite
r-lib/actions/setup-r-dependencies v2 composite

DESCRIPTION cran

R >= 3.5.0 depends
ade4 * depends
ape * depends
nlme * depends
FD * imports
e1071 * imports
geometry * imports
hypervolume * imports
rasterVis * imports
vegan * imports
entropart * suggests
fBasics * suggests
knitr * suggests
lattice * suggests
mice * suggests
picante * suggests