Science Score: 10.0%
This score indicates how likely this project is to be science-related based on various indicators:
-
○CITATION.cff file
-
○codemeta.json file
-
○.zenodo.json file
-
○DOI references
-
○Academic publication links
-
✓Committers with academic emails
1 of 3 committers (33.3%) from academic institutions -
○Institutional organization owner
-
○JOSS paper metadata
-
○Scientific vocabulary similarity
Low similarity (12.3%) to scientific vocabulary
Keywords
Repository
Bayesian State-space models for Animal Movement
Statistics
- Stars: 18
- Watchers: 3
- Forks: 2
- Open Issues: 1
- Releases: 0
Topics
Metadata Files
README.md
bsam
bsam - Bayesian State-space models for Animal Movement.
bsam is an R package that fits Bayesian state-space models via JAGS to Argos satellite tracking data. The models filter error-prone Argos locations and estimate behavioural states associated with two fundamentally different movement patterns (directed, fast movements and relatively undirected, slow movements). The models can be fit to individual animal tracks or simultaneously to a group of individuals. Plotting functions are provided to help assess lack of MCMC convergence, map estimated tracks and visualise fit to the observations.
Read ?bsam for more details on functionality and ?fit_ssm for details and examples of how to use the package.
Installation
First ensure that you have a working copy of JAGS (>= 4.2.0) for the rjags package, see instructions below.
R
library(rjags)
Get the released version of bsam from CRAN:
R
install.packages("bsam")
Or download the current development version from GitHub: ```R
install.packages("devtools")
devtools::install_github("ianjonsen/bsam") ```
JAGS installation
Install JAGS
Owner
- Name: Ian Jonsen
- Login: ianjonsen
- Kind: user
- Location: Halifax
- Company: Macquarie University
- Repositories: 3
- Profile: https://github.com/ianjonsen
Quantitative Ecologist working in R mostly with animal movement data
GitHub Events
Total
- Watch event: 2
Last Year
- Watch event: 2
Committers
Last synced: over 2 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| Ian Jonsen | i****n@m****u | 180 |
| Michael Sumner | m****r@g****m | 18 |
| Ian Jonsen | i****n@i****e | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 12 months ago
All Time
- Total issues: 11
- Total pull requests: 0
- Average time to close issues: about 1 month
- Average time to close pull requests: N/A
- Total issue authors: 6
- Total pull request authors: 0
- Average comments per issue: 1.45
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- mdsumner (6)
- ianjonsen (1)
- lidefi87 (1)
- camrinbraun (1)
- DEHewitt (1)
- maraca90 (1)
Pull Request Authors
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
-
Total downloads:
- cran 691 last-month
- Total docker downloads: 42,005
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 5
- Total maintainers: 1
cran.r-project.org: bsam
Bayesian State-Space Models for Animal Movement
- Homepage: <https://github.com/ianjonsen/bsam>
- Documentation: http://cran.r-project.org/web/packages/bsam/bsam.pdf
- License: GPL-2
-
Latest release: 1.1.3
published almost 6 years ago
Rankings
Maintainers (1)
Dependencies
- R >= 3.6.0 depends
- rjags >= 4 depends
- coda >= 0.19 imports
- dplyr >= 1.0.0 imports
- ggplot2 >= 3.3.2 imports
- gridExtra >= 2.3 imports
- lubridate >= 1.7.9 imports
- msm >= 1.6.8 imports
- mvtnorm >= 1.1 imports
- rworldxtra >= 1.01 imports
- sp >= 1.2 imports
- tibble >= 3.0.1 imports