linkcomm
Tools for Generating, Visualising, and Analysing Link Communities in Networks
Science Score: 10.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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○codemeta.json file
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○.zenodo.json file
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○DOI references
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✓Academic publication links
Links to: nature.com -
○Committers with academic emails
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (8.0%) to scientific vocabulary
Keywords
Repository
Tools for Generating, Visualising, and Analysing Link Communities in Networks
Basic Info
- Host: GitHub
- Owner: alextkalinka
- Language: R
- Default Branch: master
- Homepage: https://alextkalinka.github.io/linkcomm
- Size: 6.61 MB
Statistics
- Stars: 7
- Watchers: 1
- Forks: 2
- Open Issues: 1
- Releases: 0
Topics
Metadata Files
README.md
linkcomm
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Summary
linkcomm is an R package that provides tools for generating, visualising, and analysing Link Communities in networks. See the companion paper for more information.
Installation
r
install.packages("linkcomm")
Usage
```r
Explore the in-built Les Miserables network:
library(linkcomm) lm <- getLinkCommunities(lesmiserables) ```
```r
Visualize the communities:
plot(lm, type = "graph", layout = "spencer.circle") ```
```r
Extract the nodes from the first community:
n1 <- getNodesIn(lm, clusterids = 1)
Nodes shared by communities 10 and 11:
ns <- get.shared.nodes(lm, comms = 10:11)
Node community centrality scores:
nc <- getCommunityCentrality(lm)
Community connectedness scores:
cc <- getCommunityConnectedness(lm)
```
References
Kalinka AT, Tomancak P (2011). “linkcomm: an R package for the generation, visualization, and analysis of link communities in networks of arbitrary size and type.” Bioinformatics, 27, 2011-2012.
Owner
- Login: alextkalinka
- Kind: user
- Repositories: 3
- Profile: https://github.com/alextkalinka
GitHub Events
Total
- Push event: 1
Last Year
- Push event: 1
Committers
Last synced: over 2 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| Alex Kalinka | A****a@c****k | 14 |
| alextkalinka | 6****a | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 11 months ago
All Time
- Total issues: 1
- Total pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Total issue authors: 1
- Total pull request authors: 0
- Average comments per issue: 0.0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- alexuadler (1)
Pull Request Authors
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
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Total downloads:
- cran 375 last-month
- Total docker downloads: 48
- Total dependent packages: 2
- Total dependent repositories: 8
- Total versions: 15
- Total maintainers: 1
cran.r-project.org: linkcomm
Tools for Generating, Visualizing, and Analysing Link Communities in Networks
- Homepage: https://alextkalinka.github.io/linkcomm/
- Documentation: http://cran.r-project.org/web/packages/linkcomm/linkcomm.pdf
- License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
- Status: removed
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Latest release: 1.0-14
published over 5 years ago
Rankings
Maintainers (1)
Dependencies
- RColorBrewer * depends
- igraph * depends
- dynamicTreeCut * imports
- grid * imports
- utils * imports
- R.rsp * suggests
- fastcluster * suggests