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devRate

R CRAN package devRate

https://github.com/frareb/devrate

Science Score: 39.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 1 DOI reference(s) in README
  • ○
    Academic publication links
  • ○
    Committers with academic emails
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (15.8%) to scientific vocabulary
Last synced: 10 months ago · JSON representation

Repository

R CRAN package devRate

Basic Info
  • Host: GitHub
  • Owner: frareb
  • Language: R
  • Default Branch: master
  • Homepage:
  • Size: 6.78 MB
Statistics
  • Stars: 4
  • Watchers: 2
  • Forks: 1
  • Open Issues: 1
  • Releases: 0
Created about 10 years ago · Last pushed 11 months ago
Metadata Files
Readme Changelog

README.Rmd 

---
output: github_document
---



```{r, echo = FALSE}
knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>"
)
```

# devRate package

[![Build Status](https://app.travis-ci.com/frareb/devRate.svg?branch=master)](https://app.travis-ci.com/frareb/devRate)
[![CRAN version](https://www.r-pkg.org/badges/version/devRate)](https://CRAN.R-project.org/package=devRate)
[![CRAN downloads](https://cranlogs.r-pkg.org/badges/devRate)](https://CRAN.R-project.org/package=devRate)
[![Coverage Status](https://img.shields.io/codecov/c/gh/frareb/devRate/master.svg)](https://app.codecov.io/gh/frareb/devRate?branch=master)

## Purpose of the package

The devRate package allows quantifying the relationship between development rate and temperature in ectotherm organisms, and model species phenology using an individual-based approach. 

## How to use the package

You can use the package: 

1.  to get development rate curves as a function of temperature for a specific organism (hundred of examples from the literature are included in the package);

1.  to know which equations exists and which are most used in the literature; and

1.  to relate development rate with temperature from your empirical data, using the equations from the package database.

1.  to make phenology simulations using temperature time series and thermal performance curves.

## Installation instructions

```{r inst01, eval=FALSE}
# from CRAN
install.packages("devRate")

# Or the development version from GitHub:
# install.packages("devtools")
devtools::install_github("frareb/devRate")
```

## Overview

The devRate package provides four categories of functions:

1.  functions to find development rate information about a specific organism (Order, Family, Genus, species)

1.  functions to relate development rate and temperature, and

1.  functions to plot your empirical datasets and the associated fitted model, and/or to plot development curves from the literature.

1.  functions to perform simulations from models and temperature time series.

## Author's affiliation

UMR EGCE (IRD, CNRS, Univ. Paris-Saclay), Gif-sur-Yvette, France

To cite this package please use: 

```{r auth01, eval=TRUE}
citation("devRate") 
```

and/or:
Rebaudo F., Struelens Q., Dangles O. Modelling temperature-dependent development 
rate and phenology in arthropods: The devRate package for R. *Methods Ecol Evol.* 
2017;00:1-7. \doi{10.1111/2041-210X.12935}

Owner

  • Login: frareb
  • Kind: user

GitHub Events

Total
  • Watch event: 1
  • Push event: 10
Last Year
  • Watch event: 1
  • Push event: 10

Committers

Last synced: over 2 years ago

All Time
  • Total Commits: 747
  • Total Committers: 3
  • Avg Commits per committer: 249.0
  • Development Distribution Score (DDS): 0.066
Past Year
  • Commits: 3
  • Committers: 1
  • Avg Commits per committer: 3.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
Francois Rebaudo f****o@i****r 698
bapt-regnier b****r@i****m 33
bapt-regnier b****1@g****m 16
Committer Domains (Top 20 + Academic)
ird.com: 1 ird.fr: 1

Issues and Pull Requests

Last synced: 11 months ago

All Time
  • Total issues: 1
  • Total pull requests: 8
  • Average time to close issues: N/A
  • Average time to close pull requests: 17 days
  • Total issue authors: 1
  • Total pull request authors: 2
  • Average comments per issue: 3.0
  • Average comments per pull request: 1.25
  • Merged pull requests: 7
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • mpmontanal (1)
Pull Request Authors
  • frareb (4)
  • bapt-regnier (4)
Top Labels
Issue Labels
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • cran 411 last-month
  • Total dependent packages: 0
  • Total dependent repositories: 0
  • Total versions: 16
  • Total maintainers: 1
cran.r-project.org: devRate

Quantify the Relationship Between Development Rate and Temperature in Ectotherms

  • Versions: 16
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Downloads: 411 Last month
Rankings
Forks count: 21.9%
Stargazers count: 26.2%
Average: 28.4%
Downloads: 28.9%
Dependent packages count: 29.8%
Dependent repos count: 35.5%
Maintainers (1)
francois.rebaudo@ird.fr
Last synced: 11 months ago

Dependencies

DESCRIPTION cran
  • R >= 3.5.0 depends
  • knitr * suggests
  • minpack.lm >= 1.2 suggests
  • rmarkdown * suggests
  • testthat * suggests