dragon
Deep time Redox Analysis of the Geobiology Ontology Network
Science Score: 23.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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○codemeta.json file
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○.zenodo.json file
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✓DOI references
Found 10 DOI reference(s) in README -
○Academic publication links
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✓Committers with academic emails
1 of 2 committers (50.0%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (13.9%) to scientific vocabulary
Keywords
Repository
Deep time Redox Analysis of the Geobiology Ontology Network
Basic Info
- Host: GitHub
- Owner: sjspielman
- License: other
- Language: R
- Default Branch: master
- Homepage: https://sjspielman.shinyapps.io/dragon/
- Size: 81.1 MB
Statistics
- Stars: 2
- Watchers: 1
- Forks: 1
- Open Issues: 0
- Releases: 0
Topics
Metadata Files
README.md
This repository is now read-only. Please fork the repository to continue development, abiding by the license terms given here.
dragon
The current version is 1.2.1. Note that the license was changed to MIT with the release of 1.2.0 for compatibility with dependencies.
The dragon (Deep time Redox Analysis of the Geobiology Ontology Network) package provides a Shiny Application for generating, exploring, and analyzing bipartite mineral-chemistry networks over deep time on Earth using information from the Mineral Evolution Database, with a specific application of investigating biologically-relevant evolution of element redox states and availability over time. dragon uses igraph and visNetwork library (a terribly handy R wrapper for vis.js) to construct user-friendly interactive networks.
For instructions on obtaining and using dragon, please see the vignette.
Current link to server of current release of dragon: https://sjspielman.shinyapps.io/dragon
The associated publication is available here and can be cited as:
Spielman, Stephanie J. and Moore, Eli K. 2020. “dragon: A New Tool for Exploring Redox Evolution Preserved in the Mineral Record.” Frontiers in Earth Science. doi:10.3389/feart.2020.585087.
Or, in LaTeX:
@article{ ,
author = {Spielman, Stephanie J. and Moore, Eli K.},
title = {dragon: A New Tool for Exploring Redox Evolution Preserved in the Mineral Record},
journal = {Frontiers in Earth Science},
volume = {8},
pages = {414},
year = {2020},
doi = {10.3389/feart.2020.585087}
}
Please also cite the Mineral Evolution Database if you are using dragon:
Golden, Joshua J., Downs, Robert T., Hazen, Robert M., Pires, Alexander J., Ralph, Jolyon. 2019. Mineral Evolution Database: Data-Driven Age Assignment, How Does a Mineral Get an Age?” In GSA Annual Meeting. Phoenix, Arizona. https://doi.org/10.1130/abs/2019AM-334056.
Or, in LaTeX:
@inproceedings{ ,
location = {Phoenix, Arizona},
title = {Mineral Evolution Database: Data-Driven Age Assignment, How Does a Mineral Get an Age?},
url = {https://doi.org/10.1130/abs/2019AM-334056},
booktitle = {{GSA} Annual Meeting},
year = 2019,
author = {Golden, Joshua J. and Downs, Robert T. and Hazen, Robert M. and Pires, Alexander J. and Ralph, Jolyon}
}
Owner
- Name: Stephanie
- Login: sjspielman
- Kind: user
- Location: Philadelphia, PA
- Company: @AlexsLemonade
- Website: https://sjspielman.github.io
- Twitter: stephspiel
- Repositories: 74
- Profile: https://github.com/sjspielman
Computational biologist and data scientist
GitHub Events
Total
Last Year
Committers
Last synced: over 2 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| Stephanie J. Spielman | s****n@r****u | 366 |
| Stephanie J. Spielman | s****n@g****m | 39 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: about 2 years ago
All Time
- Total issues: 46
- Total pull requests: 0
- Average time to close issues: 20 days
- Average time to close pull requests: N/A
- Total issue authors: 6
- Total pull request authors: 0
- Average comments per issue: 2.61
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- mooreek (37)
- sjspielman (4)
- HenrikBengtsson (2)
- vtraag (1)
- TheGolden1 (1)
- lionel- (1)
Pull Request Authors
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
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Total downloads:
- cran 306 last-month
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 12
- Total maintainers: 1
cran.r-project.org: dragon
Deep Time Redox Analysis of the Geobiology Ontology Network
- Homepage: https://github.com/sjspielman/dragon
- Documentation: http://cran.r-project.org/web/packages/dragon/dragon.pdf
- License: MIT + file LICENSE
- Status: removed
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Latest release: 1.2.1
published almost 4 years ago
Rankings
Maintainers (1)
Dependencies
- R >= 3.5.0 depends
- DT >= 0.14 imports
- RColorBrewer * imports
- broom >= 0.5.6 imports
- colorspace >= 1.4 imports
- colourpicker >= 1.0 imports
- config * imports
- cowplot >= 1.0.0 imports
- curl * imports
- dplyr >= 1.0.0 imports
- future * imports
- ggforce * imports
- ggplot2 >= 3.3.5 imports
- golem >= 0.2.1 imports
- htmltools * imports
- igraph >= 1.3.0 imports
- lubridate * imports
- magrittr * imports
- openxlsx * imports
- promises * imports
- purrr * imports
- readr * imports
- rlang * imports
- rvest * imports
- shiny * imports
- shinyWidgets * imports
- shinydashboard * imports
- stats * imports
- stringr * imports
- tibble * imports
- tidyr >= 1.0.0 imports
- tidyselect * imports
- visNetwork >= 2.0.9 imports
- xml2 * imports
- knitr * suggests
- processx * suggests
- rmarkdown * suggests
- testthat >= 2.1.0 suggests
- zip * suggests