EbayesThresh
R package for Empirical Bayes thresholding and related methods.
Science Score: 10.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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○codemeta.json file
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○.zenodo.json file
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○DOI references
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○Academic publication links
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✓Committers with academic emails
3 of 7 committers (42.9%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (14.2%) to scientific vocabulary
Repository
R package for Empirical Bayes thresholding and related methods.
Basic Info
- Host: GitHub
- Owner: stephenslab
- License: gpl-3.0
- Language: R
- Default Branch: master
- Homepage: https://tinyurl.com/y9wl2nbt
- Size: 2.78 MB
Statistics
- Stars: 4
- Watchers: 5
- Forks: 1
- Open Issues: 2
- Releases: 0
Metadata Files
README.md
EbayesThresh: Empirical Bayes thresholding in R
The EbayesThresh package provides a simple interface for Empirical Bayes thresholding using the methods developed by I. M. Johnstone and B. W. Silverman.
License
The EbayesThresh source code repository is free software: you can redistribute it under the terms of the GNU General Public License. All the files in this project are part of EbayesThresh. This project is distributed in the hope that it will be useful, but without any warranty; without even the implied warranty of merchantability or fitness for a particular purpose. See file LICENSE for the full text of the license.
Quick Start
Install the latest
release
of the EbayesThresh package using devtools:
R
library(devtools)
install_github("stephenslab/EbayesThresh@v1.4-12")
Load EbayesThresh into your R environment, and get an overview of the package:
R
library(EbayesThresh)
help(package = EbayesThresh)
Explore the EbayesThresh vignette, either on the Web, or in R:
R
vignette("ebayesthresh")
What's included
This is the current structure of the R package:
bash
├── DESCRIPTION
├── LICENSE
├── NAMESPACE
├── R
├── README.md
├── inst
│ └── kan-xu-thesis.pdf
├── man
├── tests
│ ├── testthat
│ └── testthat.R
└── vignettes
└── ebayesthresh.Rmd
Credits
The EbayesThresh software package was originally developed by Bernard W. Silverman and Ludger Evers, with extensions introduced by Kan Xu, Peter Carbonetto and Matthew Stephens in the Department of Statistics at the University of Chicago.
Owner
- Name: Stephens lab
- Login: stephenslab
- Kind: organization
- Website: http://stephenslab.uchicago.edu
- Repositories: 95
- Profile: https://github.com/stephenslab
Research in statistical and computational methods for genetics at the University of Chicago.
GitHub Events
Total
Last Year
Committers
Last synced: almost 3 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| Peter Carbonetto | p****o@g****m | 70 |
| stephens999 | s****9@g****m | 19 |
| Kan Xu | k****u@u****u | 14 |
| Kan Xu | k****6@g****m | 5 |
| Bernard Silverman | b****n@s****k | 2 |
| Ludger Evers | l****r@s****k | 1 |
| Unknown author | u****n@u****n | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: over 2 years ago
All Time
- Total issues: 4
- Total pull requests: 0
- Average time to close issues: 2 days
- Average time to close pull requests: N/A
- Total issue authors: 1
- Total pull request authors: 0
- Average comments per issue: 1.5
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- stephens999 (4)
Pull Request Authors
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 2
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Total downloads:
- cran 78,292 last-month
- Total docker downloads: 43,390
-
Total dependent packages: 7
(may contain duplicates) -
Total dependent repositories: 6
(may contain duplicates) - Total versions: 5
- Total maintainers: 1
cran.r-project.org: EbayesThresh
Empirical Bayes Thresholding and Related Methods
- Homepage: https://github.com/stephenslab/EbayesThresh
- Documentation: http://cran.r-project.org/web/packages/EbayesThresh/EbayesThresh.pdf
- License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
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Latest release: 1.3.2
published almost 14 years ago
Rankings
Maintainers (1)
conda-forge.org: r-ebayesthresh
- Homepage: https://github.com/stephenslab/EbayesThresh
- License: GPL (>= 2)
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Latest release: 1.4_12
published almost 4 years ago
Rankings
Dependencies
- stats * imports
- wavethresh * imports
- dplyr * suggests
- ggplot2 * suggests
- knitr * suggests
- rmarkdown * suggests
- testthat * suggests