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rnaagecalc

A multi-tissue transcriptional age calculator

https://github.com/reese3928/rnaagecalc

Science Score: 23.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ○
    codemeta.json file
  • ○
    .zenodo.json file
  • ✓
    DOI references
    Found 2 DOI reference(s) in README
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    1 of 3 committers (33.3%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (6.8%) to scientific vocabulary

Keywords

biological-age elastic-net gene-expression genotype-tissue-expression prediction regularized-regression rna-seq
Last synced: 9 months ago · JSON representation

Repository

A multi-tissue transcriptional age calculator

Basic Info
Statistics
  • Stars: 8
  • Watchers: 1
  • Forks: 1
  • Open Issues: 3
  • Releases: 0
Topics
biological-age elastic-net gene-expression genotype-tissue-expression prediction regularized-regression rna-seq
Created over 6 years ago · Last pushed over 5 years ago
Metadata Files
Readme

README.md

RNAAgeCalc

RNAAgeCalc is a multi-tissue transcriptionals age calculator.

The RNAAgeCalc paper can be found here.
The Bioconductor package can be found here.
The Bioconductor package vignette can be found here.
An interactive Shiny App can be found here.
The Shiny App demo can be found here.
The Python version of RNAAgeCalc can be found here.

Package installation

{r} if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("RNAAgeCalc")

Citation

Ren, X., & Kuan, P. F. (2020). RNAAgeCalc: A multi-tissue transcriptional age calculator. PloS one, 15(8), e0237006.

@article{ren2020rnaagecalc,
title={RNAAgeCalc: A multi-tissue transcriptional age calculator},
author={Ren, Xu and Kuan, Pei-Fen},
journal={PLOS ONE},
volume={15},
number={8},
pages={1-21},
year={2020},
publisher={Public Library of Science}
}

Owner

  • Name: Xu Ren
  • Login: reese3928
  • Kind: user

Staying at home.

GitHub Events

Total
  • Watch event: 2
Last Year
  • Watch event: 2

Committers

Last synced: over 2 years ago

All Time
  • Total Commits: 9
  • Total Committers: 3
  • Avg Commits per committer: 3.0
  • Development Distribution Score (DDS): 0.333
Past Year
  • Commits: 0
  • Committers: 0
  • Avg Commits per committer: 0.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
Xu Ren x****n@s****u 6
Nitesh Turaga n****a@g****m 2
Xu Ren x****0@e****m 1
Committer Domains (Top 20 + Academic)
email.com: 1 stonybrook.edu: 1

Issues and Pull Requests

Last synced: 9 months ago

All Time
  • Total issues: 3
  • Total pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Total issue authors: 3
  • Total pull request authors: 0
  • Average comments per issue: 0.0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • tu12dou (1)
  • Dokmen (1)
  • yajass (1)
Pull Request Authors
Top Labels
Issue Labels
Pull Request Labels

Dependencies

DESCRIPTION cran
  • R >= 3.6 depends
  • AnnotationDbi * imports
  • SummarizedExperiment * imports
  • ggplot2 * imports
  • impute * imports
  • methods * imports
  • org.Hs.eg.db * imports
  • recount * imports
  • stats * imports
  • knitr * suggests
  • rmarkdown * suggests
  • testthat * suggests