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freesurfer

Freesurfer Port to R

https://github.com/muschellij2/freesurfer

Science Score: 46.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ✓
    Academic publication links
    Links to: zenodo.org
  • ✓
    Committers with academic emails
    2 of 3 committers (66.7%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (10.4%) to scientific vocabulary
Last synced: 7 months ago · JSON representation

Repository

Freesurfer Port to R

Basic Info
  • Host: GitHub
  • Owner: muschellij2
  • Language: R
  • Default Branch: master
  • Size: 176 MB
Statistics
  • Stars: 10
  • Watchers: 2
  • Forks: 5
  • Open Issues: 2
  • Releases: 1
Created over 9 years ago · Last pushed 11 months ago
Metadata Files
Readme Changelog

README.Rmd 

---
output: github_document
---


[![CRAN_Status_Badge](https://www.r-pkg.org/badges/version/freesurfer)](https://cran.r-project.org/package=freesurfer)
[![](https://cranlogs.r-pkg.org/badges/grand-total/freesurfer)](https://cran.r-project.org/package=freesurfer)
[![DOI](https://zenodo.org/badge/67370835.svg)](https://zenodo.org/badge/latestdoi/67370835)
[![R-CMD-check](https://github.com/muschellij2/freesurfer/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/muschellij2/freesurfer/actions/workflows/R-CMD-check.yaml)





```{r setup, include = FALSE}
knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>",
  fig.path = "man/figures/README-",
  out.width = "100%"
)
```
# freesurfer

The goal of freesurfer is a port/wrapper of [Freesurfer](https://surfer.nmr.mgh.harvard.edu) to R.



Much of the operations of Freesurfer are incorporated.  This package is very useful for structural imaging, such as MRI.  Some of the fMRI functionality has not been ported or has limited capability.

## Installation

You can install the released version of freesurfer from [CRAN](https://CRAN.R-project.org) with:

``` r
install.packages("freesurfer")
```

And the development version from [GitHub](https://github.com/) with:

``` r
# install.packages("devtools")
devtools::install_github("muschellij2/freesurfer")
```

Owner

  • Name: John Muschelli
  • Login: muschellij2
  • Kind: user
  • Location: United States
  • Company: Johns Hopkins Bloomberg School of Public Health

GitHub Events

Total
  • Issues event: 2
  • Issue comment event: 8
  • Push event: 6
  • Pull request event: 4
Last Year
  • Issues event: 2
  • Issue comment event: 8
  • Push event: 6
  • Pull request event: 4

Committers

Last synced: over 2 years ago

All Time
  • Total Commits: 217
  • Total Committers: 3
  • Avg Commits per committer: 72.333
  • Development Distribution Score (DDS): 0.023
Past Year
  • Commits: 0
  • Committers: 0
  • Avg Commits per committer: 0.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
muschellij2 m****2@g****m 212
Elizabeth Sweeney e****e@j****u 3
Athanasia Monika Mowinckel a****l@p****o 2
Committer Domains (Top 20 + Academic)
psykologi.uio.no: 1 jhsph.edu: 1

Issues and Pull Requests

Last synced: 8 months ago

All Time
  • Total issues: 8
  • Total pull requests: 7
  • Average time to close issues: 9 months
  • Average time to close pull requests: about 19 hours
  • Total issue authors: 6
  • Total pull request authors: 3
  • Average comments per issue: 3.13
  • Average comments per pull request: 0.57
  • Merged pull requests: 5
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 1
  • Pull requests: 1
  • Average time to close issues: about 7 hours
  • Average time to close pull requests: about 19 hours
  • Issue authors: 1
  • Pull request authors: 1
  • Average comments per issue: 1.0
  • Average comments per pull request: 4.0
  • Merged pull requests: 1
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • snaillyd (2)
  • dorianps (2)
  • goosebeums (1)
  • koikelab (1)
  • chriskisskiss (1)
  • Jasmine1990 (1)
Pull Request Authors
  • drmowinckels (6)
  • emsweene (3)
  • Terf (1)
Top Labels
Issue Labels
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • cran 340 last-month
  • Total docker downloads: 11
  • Total dependent packages: 1
  • Total dependent repositories: 1
  • Total versions: 8
  • Total maintainers: 1
cran.r-project.org: freesurfer

Wrapper Functions for 'Freesurfer'

  • Versions: 8
  • Dependent Packages: 1
  • Dependent Repositories: 1
  • Downloads: 340 Last month
  • Docker Downloads: 11
Rankings
Forks count: 11.3%
Dependent packages count: 18.7%
Stargazers count: 19.8%
Dependent repos count: 25.5%
Average: 33.0%
Downloads: 89.7%
Maintainers (1)
muschellij2@gmail.com
Last synced: 8 months ago

Dependencies

DESCRIPTION cran
  • R >= 3.2.0 depends
  • R.utils * imports
  • methods * imports
  • neurobase * imports
  • reshape2 * imports
  • tools * imports
  • utils * imports
  • fslr >= 2.9.2 suggests
  • knitr * suggests
  • magrittr * suggests
  • oro.nifti >= 0.7 suggests
  • pander * suggests
  • rgl * suggests
  • rmarkdown * suggests
.github/workflows/R-CMD-check.yaml actions
  • actions/checkout v4 composite
  • r-lib/actions/check-r-package v2 composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-r-dependencies v2 composite