funrar
:package: R package to compute functional rarity indices (functional distinctiveness, uniqueness, restrictedness, scarcity)
Science Score: 46.0%
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○CITATION.cff file
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○.zenodo.json file
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✓DOI references
Found 7 DOI reference(s) in README -
✓Academic publication links
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✓Committers with academic emails
1 of 7 committers (14.3%) from academic institutions -
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○Scientific vocabulary similarity
Low similarity (14.3%) to scientific vocabulary
Keywords
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Repository
:package: R package to compute functional rarity indices (functional distinctiveness, uniqueness, restrictedness, scarcity)
Basic Info
- Host: GitHub
- Owner: Rekyt
- Language: R
- Default Branch: main
- Homepage: https://rekyt.github.io/funrar
- Size: 5.37 MB
Statistics
- Stars: 17
- Watchers: 3
- Forks: 1
- Open Issues: 2
- Releases: 9
Topics
Metadata Files
README.md
funrar - Computing Functional rarity indices 
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funrar is a package to compute functional rarity indices, it quantifies how species are rare both from a functional and an extent point of view. Following the different facets of rarity proposed by Rabinowitz (1981). See this reference for more details on Functional Rarity indices:
Violle C., Thuiller W., Mouquet N., Munoz F., Kraft NJB, Cadotte MW, Livingstone SW, Mouillot D., Functional Rarity: The Ecology of Outliers, Trends in Ecology & Evolution, Volume 32, Issue 5, May 2017, Pages 356-367, ISSN 0169-5347, https://doi.org/10.1016/j.tree.2017.02.002.
Citation
Please cite the following reference when using funrar in a paper:
Grenié M, Denelle P, Tucker CM, Munoz F, Violle C. funrar: An R package to characterize functional rarity. Divers Distrib. 2017;00:1–7. https://doi.org/10.1111/ddi.12629
or refer to the CITATION file, using:
r
citation(package = "funrar")
Installation
The package is on CRAN, you can install it using:
r
install.packages("funrar")
If you want to have the latest development version use remotes:
```r
install.packages("remotes") # If 'remotes' is not installed yet
remotes::installgithub("Rekyt/funrar", buildvignettes = TRUE) ```
Example vignettes
In addition to code example included in help of functions, two vignettes explain how to use the package. The functional rarity indices vignette explains in details the different indices and function provided; while the sparse matrices vignette shows how to use sparse matrices to gain speed in memory when computing functional rarity indices.
Access the vignette through R using the vignette() abd browseVignettes() functions.
References
Rabinowitz D., Seven forms of rarity In The Biological Aspects of Rare Plant Conservation (1981), pp. 205-217
Owner
- Name: Matthias Grenié
- Login: Rekyt
- Kind: user
- Location: Grenoble, France
- Company: Université Grenoble Alpes / Laboratoire d'Écologie Alpine (LECA)
- Website: http://rekyt.github.io/
- Repositories: 61
- Profile: https://github.com/Rekyt
Assistant Professor of Biostatistics & Ecology
GitHub Events
Total
Last Year
Committers
Last synced: 7 months ago
Top Committers
| Name | Commits | |
|---|---|---|
| Rekyt | m****e@e****r | 360 |
| Pierre DENELLE | p****e@c****r | 18 |
| Pierre DENELLE | P****E | 4 |
| cmtucker | c****r | 2 |
| Julia Silge | j****e@g****m | 2 |
| Hugo Gruson | B****o | 2 |
| Pierre DENELLE | d****e@n****r | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 6 months ago
All Time
- Total issues: 46
- Total pull requests: 7
- Average time to close issues: about 1 year
- Average time to close pull requests: 2 days
- Total issue authors: 3
- Total pull request authors: 3
- Average comments per issue: 1.07
- Average comments per pull request: 0.86
- Merged pull requests: 7
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 1
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 1
- Pull request authors: 0
- Average comments per issue: 1.0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- Rekyt (38)
- cmtucker (6)
- pierredenelle (2)
Pull Request Authors
- Rekyt (5)
- Bisaloo (2)
- juliasilge (1)
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 2
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Total downloads:
- cran 496 last-month
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Total dependent packages: 1
(may contain duplicates) -
Total dependent repositories: 1
(may contain duplicates) - Total versions: 19
- Total maintainers: 1
cran.r-project.org: funrar
Functional Rarity Indices Computation
- Homepage: https://rekyt.github.io/funrar/
- Documentation: http://cran.r-project.org/web/packages/funrar/funrar.pdf
- License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
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Latest release: 1.5.0
published over 3 years ago
Rankings
Maintainers (1)
conda-forge.org: r-funrar
- Homepage: https://rekyt.github.io/funrar/
- License: GPL-2.0-or-later
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Latest release: 1.5.0
published over 3 years ago
Rankings
Dependencies
- R >= 3.2.2 depends
- cluster * imports
- methods * imports
- stats * imports
- Matrix * suggests
- ade4 * suggests
- ggplot2 * suggests
- knitr * suggests
- rmarkdown * suggests
- testthat >= 2.99.0 suggests
- tidytext * suggests