Science Score: 36.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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○Academic publication links
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✓Committers with academic emails
2 of 5 committers (40.0%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (3.7%) to scientific vocabulary
Keywords
Repository
R packages
Basic Info
- Host: GitHub
- Owner: jinghuazhao
- Language: HTML
- Default Branch: master
- Homepage: https://jinghuazhao.github.io/R/
- Size: 218 MB
Statistics
- Stars: 12
- Watchers: 2
- Forks: 4
- Open Issues: 4
- Releases: 0
Topics
Metadata Files
README.md
R
A summary
Shown below are links to packages I have maintained[^1], with individual files to be found from https://github.com/jinghuazhao/R.
See also documentation reformatted by datacamp, https://www.rdocumentation.org/: gap, gap.datasets, lmm, pan. tdthap.
Packages[^2] | CRAN | Vignette | GitHub | R package documentation --------|---------------------------------------------|---------|---------------------|--------------------------------------------- gap | https://cran.r-project.org/package=gap | gap[^3] | https://github.com/cran/gap | https://rdrr.io/cran/gap/ | | jss | | manual | | shinygap gap.datasets | https://cran.r-project.org/package=gap.datasets | | https://github.com/cran/gap.datasets | https://rdrr.io/cran/gap.datasets/ gap.examples | | gap.examples | | h2 | | pedtodot | | rnews lmm | https://cran.r-project.org/package=lmm | lmm | https://github.com/cran/lmm | https://rdrr.io/cran/lmm/ pan | https://cran.r-project.org/package=pan | pan | https://github.com/cran/pan | https://rdrr.io/cran/pan/ tdthap | https://cran.r-project.org/package=tdthap | tdthap| https://github.com/cran/tdthap | https://rdrr.io/cran/tdthap/ kinship[^4] | https://cran.r-project.org/src/contrib/Archive/kinship/ | kinship | https://github.com/cran/kinship
It contains packages CGR which is not available from CRAN and kinship which has additional update.
Installation
You can install these packages either from CRAN, e.g.,
r
install.packages("pan", repos="https://cran.r-project.org")
or GitHub,
r
library(devtools)
install_github("jinghuazhao/R/gap", build_vignettes = TRUE)
[^1]: Contributed work
> - Network Regression method in TWAS, [NeRiT](https://github.com/XiuyuanJin/NeRiT).
> - `g.binread` function, [**GGIR**](https://cran.r-project.org/package=GGIR) & [GGIRread](https://cran.r-project.org/web/packages/GGIRread/index.html).
> - [**ITHIM** injurymodel](https://github.com/ithim/injurymodel) through a hackathon at MRC.
[^2]: Featured CRAN task views:
> - Genetics: **gap**, **tdthap**
> - Meta-Analysis: **gap**
> - Social science: **lmm**, **pan**
[^3]: Additional use can be found from a package vignette pQTLtools.
[^4]: Windows package kinship_1.1.4.zip is built from kinship_1.1.4.tar.gz via https://win-builder.r-project.org/.
Owner
- Name: Jing Hua Zhao
- Login: jinghuazhao
- Kind: user
- Location: United Kingdom
- Company: University of Cambridge
- Website: https://jinghuazhao.github.io
- Repositories: 40
- Profile: https://github.com/jinghuazhao
Statistics & Computing,in genetics, epidemiology & public health
GitHub Events
Total
- Push event: 18
Last Year
- Push event: 18
Committers
Last synced: 6 months ago
Top Committers
| Name | Commits | |
|---|---|---|
| jinghuazhao@github.com | j****o@h****m | 2,433 |
| jinghuazhao | j****o@u****m | 35 |
| jinghuazhao | j****o@m****k | 25 |
| Guido Schwarzer | sc@i****e | 1 |
| Jing Hua Zhao | j****2@l****n | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 6 months ago
All Time
- Total issues: 6
- Total pull requests: 1
- Average time to close issues: 25 minutes
- Average time to close pull requests: 1 day
- Total issue authors: 6
- Total pull request authors: 1
- Average comments per issue: 3.33
- Average comments per pull request: 0.0
- Merged pull requests: 1
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- jinghuazhao (1)
- suiyuano (1)
- sjmack (1)
- MartinBulla (1)
- privefl (1)
- da3hill (1)
Pull Request Authors
- guido-s (1)
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 6
-
Total downloads:
- cran 26,560 last-month
- Total docker downloads: 253,783
-
Total dependent packages: 9
(may contain duplicates) -
Total dependent repositories: 35
(may contain duplicates) - Total versions: 86
- Total maintainers: 1
cran.r-project.org: gap
Genetic Analysis Package
- Homepage: https://github.com/jinghuazhao/R
- Documentation: http://cran.r-project.org/web/packages/gap/gap.pdf
- License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
-
Latest release: 1.2.2
published about 6 years ago
Rankings
Maintainers (1)
cran.r-project.org: gap.datasets
Datasets for 'gap'
- Homepage: https://jinghuazhao.github.io/R/
- Documentation: http://cran.r-project.org/web/packages/gap.datasets/gap.datasets.pdf
- License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
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Latest release: 0.0.6
published over 2 years ago
Rankings
Maintainers (1)
cran.r-project.org: lmm
Linear Mixed Models
- Homepage: https://github.com/jinghuazhao/R
- Documentation: http://cran.r-project.org/web/packages/lmm/lmm.pdf
- License: Unlimited
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Latest release: 1.4
published over 2 years ago
Rankings
Maintainers (1)
cran.r-project.org: tdthap
TDT Tests for Extended Haplotypes
- Homepage: https://github.com/jinghuazhao/R
- Documentation: http://cran.r-project.org/web/packages/tdthap/tdthap.pdf
- License: Artistic-2.0
-
Latest release: 1.3
published about 2 years ago
Rankings
Maintainers (1)
conda-forge.org: r-gap
- Homepage: https://github.com/jinghuazhao/R
- License: GPL-2.0-or-later
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Latest release: 1.2.2
published about 6 years ago
Rankings
conda-forge.org: r-gap.datasets
- Homepage: https://jinghuazhao.github.io/R/
- License: GPL-2.0-or-later
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Latest release: 0.0.5
published almost 4 years ago
Rankings
Dependencies
- R >= 2.0.0 depends
- actions/checkout v3 composite
- r-lib/actions/setup-r f57f1301a053485946083d7a45022b278929a78a composite
- R >= 2.10 depends
- gap.datasets >= 0.0.6 depends
- shiny * enhances
- Rdpack * imports
- dplyr * imports
- ggplot2 * imports
- plotly * imports
- BradleyTerry2 * suggests
- DOT * suggests
- DiagrammeR * suggests
- MASS * suggests
- MCMCglmm * suggests
- Matrix * suggests
- R2jags * suggests
- bdsmatrix * suggests
- bookdown * suggests
- calibrate * suggests
- circlize * suggests
- coda * suggests
- cowplot * suggests
- coxme * suggests
- foreign * suggests
- genetics * suggests
- grid * suggests
- haplo.stats * suggests
- htmlwidgets * suggests
- jsonlite * suggests
- kinship2 * suggests
- knitr * suggests
- lattice * suggests
- magic * suggests
- manhattanly * suggests
- matrixStats * suggests
- meta * suggests
- metafor * suggests
- nlme * suggests
- pedigree * suggests
- pedigreemm * suggests
- plotrix * suggests
- readr * suggests
- reshape * suggests
- rmarkdown * suggests
- rms * suggests
- survival * suggests
- valr * suggests
- R >= 2.10 depends
- R >= 2.10 depends
- gap * suggests
- mets * suggests
- R >= 2.8.0 depends
- lattice * depends
- methods * depends
- nlme * depends
- survival * depends
- R >= 2.0.0 depends
- lme4 * suggests
- mitools * suggests
- R >= 1.5.0 depends