Science Score: 36.0%
This score indicates how likely this project is to be science-related based on various indicators:
-
○CITATION.cff file
-
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
-
○Academic publication links
-
✓Committers with academic emails
1 of 7 committers (14.3%) from academic institutions -
○Institutional organization owner
-
○JOSS paper metadata
-
○Scientific vocabulary similarity
Low similarity (13.4%) to scientific vocabulary
Repository
GeMTC R package: model generation for network meta-analysis
Basic Info
- Host: GitHub
- Owner: gertvv
- License: gpl-3.0
- Language: R
- Default Branch: develop
- Size: 8.16 MB
Statistics
- Stars: 46
- Watchers: 9
- Forks: 27
- Open Issues: 22
- Releases: 0
Metadata Files
README.md
GeMTC R package
GeMTC is an R package for Network Meta-Analysis (also know as Mixed Treatment Comparison, MTC) model generation.
Building
Use R CMD build gemtc to build the R package. The Makefile offers a
number of targets for convenience, but is entirely optional. Use make
install to both build and install the package.
You will need a working installation of rjags, which in turn requires a working installation of JAGS.
Testing
The testthat package is used for testing. Tests reside in the
tests/testthat directory. There are three levels of tests:
unit: unit tests - these test relatively isolated pieces of functionality and should be fast to run. They will be run bymake testorR CMD check.regress: regression tests exercise full code paths, and typically run all code that an analyst would run on a given dataset. They aim to catch bugs in existing functionality due to the introduction of new code. They should not take very long to run, and do not aim to produce reasonable posterior estimates. These can be run usingmake regress.validate: valition tests verify the posterior summaries obtained by the R package against results that were previously (manually) checked against results published in the literature. They typically take very long to run, and are probabilistic in nature. Many individual comparisons are made, so a couple of failures over the entire test suite are to be expected. However, these should not be systematic. These tests can be run usingmake validate.
License
GeMTC is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
GeMTC is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with GeMTC. If not, see <http://www.gnu.org/licenses/>.
See LICENSE.txt for details.
Owner
- Name: Gert van Valkenhoef
- Login: gertvv
- Kind: user
- Location: Denmark
- Company: Cochrane
- Website: http://gertvv.nl/
- Repositories: 40
- Profile: https://github.com/gertvv
GitHub Events
Total
- Watch event: 2
- Push event: 1
- Fork event: 1
Last Year
- Watch event: 2
- Push event: 1
- Fork event: 1
Committers
Last synced: over 2 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| Gert van Valkenhoef | g****f@r****l | 460 |
| Joel Kuiper | me@j****u | 110 |
| Tommi Tervonen | t****n@e****l | 9 |
| Gert van Valkenhoef | g****t@g****l | 6 |
| Tommi Tervonen | t****n@e****m | 1 |
| martyn | m****r@g****m | 1 |
| Katrin Leinweber | k****i@p****e | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 11 months ago
All Time
- Total issues: 69
- Total pull requests: 10
- Average time to close issues: 12 months
- Average time to close pull requests: 3 months
- Total issue authors: 29
- Total pull request authors: 7
- Average comments per issue: 1.55
- Average comments per pull request: 0.9
- Merged pull requests: 4
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 1
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 1
- Average comments per issue: 0
- Average comments per pull request: 0.0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- gertvv (32)
- DanielReid (3)
- tommite (3)
- GustafRydevik (2)
- joelkuiper (2)
- CatherineRoyer (2)
- epiben (1)
- TanjaProc (1)
- riher (1)
- Kingsman-Key (1)
- fersalme (1)
- verweijs (1)
- hemy2511 (1)
- coraschefft (1)
- Idrasil (1)
Pull Request Authors
- tommite (3)
- joelkuiper (2)
- fenguoerbian (2)
- martynplummer (1)
- katrinleinweber (1)
- riher (1)
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
-
Total downloads:
- cran 16,553 last-month
- Total docker downloads: 43,512
- Total dependent packages: 1
- Total dependent repositories: 3
- Total versions: 27
- Total maintainers: 1
cran.r-project.org: gemtc
Network Meta-Analysis Using Bayesian Methods
- Homepage: https://github.com/gertvv/gemtc
- Documentation: http://cran.r-project.org/web/packages/gemtc/gemtc.pdf
- License: GPL-3
-
Latest release: 0.8.1
published almost 10 years ago
Rankings
Maintainers (1)
Dependencies
- coda >= 0.13 depends
- Rglpk * imports
- grDevices * imports
- graphics * imports
- grid * imports
- igraph >= 1.0 imports
- meta >= 2.1 imports
- plyr >= 1.8 imports
- rjags >= 4 imports
- stats * imports
- truncnorm * imports
- utils * imports
- Matrix * suggests
- XML >= 3.6 suggests
- testthat >= 0.8 suggests