ggmix

https://github.com/sahirbhatnagar/ggmix

Science Score: 33.0%

This score indicates how likely this project is to be science-related based on various indicators:

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CITATION.cff file
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codemeta.json file
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.zenodo.json file
✓
DOI references
Found 3 DOI reference(s) in README
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Academic publication links
Links to: plos.org
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Committers with academic emails
2 of 4 committers (50.0%) from academic institutions
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Institutional organization owner
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JOSS paper metadata
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Scientific vocabulary similarity
Low similarity (11.3%) to scientific vocabulary

Last synced: 10 months ago · JSON representation

Repository

Basic Info

Host: GitHub
Owner: sahirbhatnagar
License: other
Language: HTML
Default Branch: master
Homepage: http://sahirbhatnagar.com/ggmix/
Size: 120 MB

Statistics

Stars: 10
Watchers: 2
Forks: 6
Open Issues: 1
Releases: 0

Created about 9 years ago · Last pushed over 5 years ago

Metadata Files

Readme License Code of conduct

README.md

ggmix: Simultaneous SNP selection and adjustment for population structure in high dimensional prediction models

Installation

```r

stable version from CRAN

install.packages("ggmix")

development version from GitHub

if (!requireNamespace("pacman")) install.packages("pacman") pacman::ploadgh('sahirbhatnagar/ggmix') ```

Methodological Details

The companion paper is available at https://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1008766

Documentation

Please visit https://sahirbhatnagar.com/ggmix/ for details on how to use this package.

Please note that the 'ggmix' project is released with a Contributor Code of Conduct. By contributing to this project, you agree to abide by its terms.

References

If you use ggmix in your work, I would highly appreciate if you cite the paper and the package:

Bhatnagar SR, Yang Y, Lu T, Schurr E, Loredo-Osti JC, Forest M, Oualkacha K, Greenwood CMT (2020). Simultaneous SNP selection and adjustment for population structure in high dimensional prediction models. PLoS Genet 16(5): e1008766. https://doi.org/10.1371/journal.pgen.1008766.
Bhatnagar SR, Oualkacha K, Yang Y, Greenwood CMT (2020). ggmix: Variable Selection in Linear Mixed Models for SNP Data. R package version 0.0.2. https://github.com/sahirbhatnagar/ggmix.

Owner

Name: Sahir Bhatnagar
Login: sahirbhatnagar
Kind: user
Location: Montreal, QC, Canada
Company: McGill University

Website: http://sahirbhatnagar.com/
Repositories: 81
Profile: https://github.com/sahirbhatnagar

GitHub Events

Total

Last Year

Committers

Last synced: over 2 years ago

All Time

Total Commits: 222
Total Committers: 4
Avg Commits per committer: 55.5
Development Distribution Score (DDS): 0.095

Past Year

Commits: 0
Committers: 0
Avg Commits per committer: 0.0
Development Distribution Score (DDS): 0.0

Top Committers

Name	Email	Commits
Sahir Bhatnagar	s**r@g**m	201
Tianyuan Lu	t**u@m**a	14
Tianyuan Lu	l**4@f**n	4
Tianyuan Lu	t**u@4**l	3

Committer Domains (Top 20 + Academic)

fudan.edu.cn: 1 mail.mcgill.ca: 1

Issues and Pull Requests

Last synced: over 2 years ago

All Time

Total issues: 2
Total pull requests: 20
Average time to close issues: about 18 hours
Average time to close pull requests: 12 days
Total issue authors: 2
Total pull request authors: 2
Average comments per issue: 0.0
Average comments per pull request: 0.1
Merged pull requests: 17
Bot issues: 0
Bot pull requests: 0

Past Year

Issues: 0
Pull requests: 0
Average time to close issues: N/A
Average time to close pull requests: N/A
Issue authors: 0
Pull request authors: 0
Average comments per issue: 0
Average comments per pull request: 0
Merged pull requests: 0
Bot issues: 0
Bot pull requests: 0

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Top Authors

Issue Authors

sahirbhatnagar (1)
Wenqing-Jiang (1)

Pull Request Authors

sahirbhatnagar (16)
tianyuan-lu (4)

Top Labels

Issue Labels

Pull Request Labels

Packages

Total packages: 1
Total downloads:
- cran 265 last-month

Total dependent packages: 0
Total dependent repositories: 1
Total versions: 2
Total maintainers: 1

cran.r-project.org: ggmix

Variable Selection in Linear Mixed Models for SNP Data

Homepage: https://github.com/sahirbhatnagar/ggmix
Documentation: http://cran.r-project.org/web/packages/ggmix/ggmix.pdf
License: MIT + file LICENSE
Latest release: 0.0.2
published over 5 years ago

Versions: 2
Dependent Packages: 0
Dependent Repositories: 1
Downloads: 265 Last month

Rankings

Forks count: 9.6%

Stargazers count: 16.5%

Dependent repos count: 24.0%

Average: 27.0%

Dependent packages count: 28.8%

Downloads: 56.2%

Maintainers (1)

sahir.bhatnagar@gmail.com

Last synced: 11 months ago

Dependencies

DESCRIPTION cran

R >= 3.4.0 depends
MASS * imports
Matrix * imports
glmnet * imports
methods * imports
stats * imports
RSpectra * suggests
bnpsd * suggests
covr * suggests
knitr * suggests
popkin * suggests
rmarkdown * suggests
testthat * suggests