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glmmTMB

glmmTMB

https://github.com/glmmtmb/glmmtmb

Science Score: 36.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    5 of 28 committers (17.9%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (10.7%) to scientific vocabulary

Keywords from Contributors

standardization report easystats estimate statistical-models insight names beta correlation anova
Last synced: 10 months ago · JSON representation

Repository

glmmTMB

Basic Info
  • Host: GitHub
  • Owner: glmmTMB
  • Language: HTML
  • Default Branch: master
  • Size: 198 MB
Statistics
  • Stars: 331
  • Watchers: 20
  • Forks: 67
  • Open Issues: 216
  • Releases: 0
Created almost 11 years ago · Last pushed 10 months ago
Metadata Files
Readme

README.md

glmmTMB

cran version downloads total downloads R-CMD-check <!-- badges: end -->

Note Most user-level information has migrated to the GitHub pages site; please check there.

glmmTMB is an R package for fitting generalized linear mixed models (GLMMs) and extensions, built on Template Model Builder, which is in turn built on CppAD and Eigen. It handles a wide range of statistical distributions (Gaussian, Poisson, binomial, negative binomial, Beta ...) as well as model extensions such as zero-inflation, heteroscedasticity, and autocorrelation. Fixed and random effects models can be specified for the conditional and zero-inflated components of the model, as well as fixed effects models for the dispersion parameter.

Where to ask questions

  • for questions about mixed models and data analysis:
  • for questions about glmmTMB usage:
    • r-sig-mixed-models@r-project.org or
    • Stack Overflow
      (similar pros/cons as the previous point)
  • for bug, infelicity, and wishlist reporting: the glmmTMB issues list
  • for TMB-specific questions: the TMB users forum
  • maintainer e-mail only for urgent/private communications

Please do not cross-post, i.e. ask the same question in more than one forum, unless it's suggested that you have posted in the wrong place, or unless you receive total silence in one forum. In the latter case it may be better to send a reminder/"bump" message to the original forum; in any case you should mention in your new message where/when you've previously asked the question.

Owner

  • Name: glmmTMB
  • Login: glmmTMB
  • Kind: organization

GitHub Events

Total
  • Create event: 38
  • Commit comment event: 4
  • Issues event: 117
  • Watch event: 34
  • Delete event: 31
  • Issue comment event: 451
  • Push event: 145
  • Pull request review event: 8
  • Pull request review comment event: 7
  • Pull request event: 70
  • Fork event: 7
Last Year
  • Create event: 38
  • Commit comment event: 4
  • Issues event: 117
  • Watch event: 34
  • Delete event: 31
  • Issue comment event: 451
  • Push event: 145
  • Pull request review event: 8
  • Pull request review comment event: 7
  • Pull request event: 70
  • Fork event: 7

Committers

Last synced: over 2 years ago

All Time
  • Total Commits: 1,938
  • Total Committers: 28
  • Avg Commits per committer: 69.214
  • Development Distribution Score (DDS): 0.364
Past Year
  • Commits: 228
  • Committers: 7
  • Avg Commits per committer: 32.571
  • Development Distribution Score (DDS): 0.105
Top Committers
Name Email Commits
Ben Bolker b****r@g****m 1,233
mollie brooks m****s@g****m 255
Kasper Kristensen k****r@d****k 171
Kasper Kristensen k****r@i****k 45
Martin Maechler m****r@r****g 39
Nafis Sadat s****s@u****u 36
Daniel B. Stouffer d****r@c****z 35
Arni Magnusson a****a@h****s 31
mmcgillycuddy 4****y 17
koenvanbenthem k****m@g****m 17
Brenton M. Wiernik b****k 16
pkgdown-bot p****t 11
Mollie Brooks m****s 6
Anders Nielsen f****r@g****m 6
Russell V. Lenth r****h@u****u 4
Daniel m****l@d****e 2
Sean Anderson s****n@s****a 2
Douglas Ezra Morrison d****n@g****m 2
Kasper Kristensen k****r@l****n 1
unknown m****y@g****m 1
Martin Mächler m****r@s****h 1
Matthias Grenié m****e@e****r 1
Bryce Mecum p****h@g****m 1
koenvanbenthem b****r@b****8 1
Arni Magnusson t****i@g****m 1
skaug h****g@g****m 1
Casper W. Berg c****g@g****m 1
Ben Bolker b****r@m****l 1
Committer Domains (Top 20 + Academic)
bio23.1318: 1 ens-lyon.fr: 1 stat.math.ethz.ch: 1 localhost.localdomain: 1 seananderson.ca: 1 danielluedecke.de: 1 uiowa.edu: 1 hafro.is: 1 canterbury.ac.nz: 1 uw.edu: 1 r-project.org: 1 imm.dtu.dk: 1 dtu.dk: 1

Issues and Pull Requests

Last synced: 10 months ago

All Time
  • Total issues: 294
  • Total pull requests: 196
  • Average time to close issues: 5 months
  • Average time to close pull requests: 14 days
  • Total issue authors: 155
  • Total pull request authors: 14
  • Average comments per issue: 4.84
  • Average comments per pull request: 1.99
  • Merged pull requests: 166
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 87
  • Pull requests: 78
  • Average time to close issues: 13 days
  • Average time to close pull requests: 10 days
  • Issue authors: 51
  • Pull request authors: 6
  • Average comments per issue: 1.78
  • Average comments per pull request: 1.01
  • Merged pull requests: 61
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • bbolker (69)
  • strengejacke (22)
  • mebrooks (10)
  • psmorris15 (6)
  • DexterGlass (5)
  • SchmidtPaul (3)
  • qdread (3)
  • StaffanBetner (3)
  • DrJerryTAO (3)
  • santoshbs (3)
  • florianhartig (3)
  • dongwenluo (2)
  • sschooler (2)
  • Franelizabethgalvez (2)
  • naveranoc (2)
Pull Request Authors
  • bbolker (147)
  • mebrooks (10)
  • strengejacke (8)
  • kaskr (7)
  • mmcgillycuddy (6)
  • psmorris15 (4)
  • stouffer (3)
  • fdchevalier (2)
  • gavinsimpson (2)
  • dke-chan (2)
  • danielinteractive (2)
  • rvlenth (1)
  • ElliotDovers (1)
  • arni-magnusson (1)
Top Labels
Issue Labels
enhancement (2) bug (2) feature_request (2) wishlist (1)
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • cran 29,772 last-month
  • Total docker downloads: 669,356
  • Total dependent packages: 48
  • Total dependent repositories: 81
  • Total versions: 23
  • Total maintainers: 1
cran.r-project.org: glmmTMB

Generalized Linear Mixed Models using Template Model Builder

  • Versions: 23
  • Dependent Packages: 48
  • Dependent Repositories: 81
  • Downloads: 29,772 Last month
  • Docker Downloads: 669,356
Rankings
Forks count: 1.5%
Stargazers count: 1.8%
Dependent packages count: 1.9%
Dependent repos count: 2.6%
Downloads: 3.2%
Average: 5.4%
Docker downloads count: 21.2%
Maintainers (1)
mollieebrooks@gmail.com
Last synced: 10 months ago

Dependencies

.github/workflows/R-CMD-check-allOS.yaml actions
  • actions/cache v2 composite
  • actions/checkout v2 composite
  • actions/upload-artifact main composite
  • r-lib/actions/setup-pandoc v1 composite
  • r-lib/actions/setup-r v1 composite
.github/workflows/R-CMD-check.yaml actions
  • actions/cache v3 composite
  • actions/checkout v2 composite
  • actions/upload-artifact main composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
.github/workflows/pkgdown.yaml actions
  • actions/cache v1.0.1 composite
  • actions/checkout master composite
  • actions/checkout v2 composite
  • r-lib/actions/setup-pandoc v1 composite
  • r-lib/actions/setup-r v1 composite