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manhattanly

https://github.com/sahirbhatnagar/manhattanly

Science Score: 10.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ○
    codemeta.json file
  • ○
    .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    1 of 3 committers (33.3%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (13.8%) to scientific vocabulary
Last synced: 11 months ago · JSON representation

Repository

Basic Info
Statistics
  • Stars: 61
  • Watchers: 4
  • Forks: 17
  • Open Issues: 7
  • Releases: 0
Created about 10 years ago · Last pushed about 5 years ago
Metadata Files
Readme License

README.md

R-CMD-check Downloads CRAN Lifecycle:maturing Codecov test coverage <!-- badges: end -->

manhattanly

The goal of manhattanly is to create interactive manhattan, Q-Q and volcano plots

Installation

You can install manhattanly from CRAN:

R install.packages("manhattanly")

Alternatively, you can install the development version of manhattanly from GitHub with:

R install.packages("devtools") devtools::install_github("sahirbhatnagar/manhattanly", build_vignettes = TRUE)

Vignette

See the online vignette for example usage of the functions.

Credit

This package is inspired by the qqman R package. The pre-processing of the data in the manhattanly package is based on the qqman::manhattan and qqman::qq functions.

The splitting of the tasks into data pre-processing and plot rendering is inspired by the heatmaply R package.

Related Work

Contact

Latest news

You can see the most recent changes to the package in the NEWS.md file

Code of Conduct

Please note that this project is released with a Contributor Code of Conduct. By participating in this project you agree to abide by its terms.

Owner

  • Name: Sahir Bhatnagar
  • Login: sahirbhatnagar
  • Kind: user
  • Location: Montreal, QC, Canada
  • Company: McGill University

GitHub Events

Total
  • Watch event: 1
Last Year
  • Watch event: 1

Committers

Last synced: almost 3 years ago

All Time
  • Total Commits: 94
  • Total Committers: 3
  • Avg Commits per committer: 31.333
  • Development Distribution Score (DDS): 0.053
Past Year
  • Commits: 0
  • Committers: 0
  • Avg Commits per committer: 0.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
sahirbhatnagar s****r@g****m 89
Nima Emami n****i@u****u 4
thebioengineer e****s@l****m 1
Committer Domains (Top 20 + Academic)
ucsf.edu: 1

Issues and Pull Requests

Last synced: about 1 year ago

All Time
  • Total issues: 17
  • Total pull requests: 10
  • Average time to close issues: about 1 year
  • Average time to close pull requests: about 11 hours
  • Total issue authors: 13
  • Total pull request authors: 3
  • Average comments per issue: 2.12
  • Average comments per pull request: 1.1
  • Merged pull requests: 10
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • sahirbhatnagar (3)
  • Boel (2)
  • mshadbolt (2)
  • sert23 (1)
  • davidvilanova (1)
  • davemcg (1)
  • mfazel (1)
  • swvanderlaan (1)
  • vinod1981 (1)
  • waskes (1)
  • sophiegresh (1)
  • Phaethon1 (1)
  • rpkyle (1)
Pull Request Authors
  • sahirbhatnagar (8)
  • thebioengineer (1)
  • nemami (1)
Top Labels
Issue Labels
bug (3) question (3) enhancement (2)
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • cran 400 last-month
  • Total docker downloads: 42,782
  • Total dependent packages: 2
  • Total dependent repositories: 6
  • Total versions: 3
  • Total maintainers: 1
cran.r-project.org: manhattanly

Interactive Q-Q and Manhattan Plots Using 'plotly.js'

  • Versions: 3
  • Dependent Packages: 2
  • Dependent Repositories: 6
  • Downloads: 400 Last month
  • Docker Downloads: 42,782
Rankings
Docker downloads count: 0.6%
Forks count: 4.4%
Stargazers count: 5.8%
Average: 9.0%
Dependent repos count: 11.9%
Dependent packages count: 13.7%
Downloads: 17.8%
Maintainers (1)
sahir.bhatnagar@gmail.com
Last synced: about 1 year ago

Dependencies

DESCRIPTION cran
  • R >= 3.5.0 depends
  • ggplot2 * imports
  • magrittr * imports
  • plotly * imports
  • stats * imports
  • covr * suggests
  • knitr * suggests
  • rmarkdown * suggests
  • testthat >= 3.0.0 suggests