Science Score: 23.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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○codemeta.json file
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○.zenodo.json file
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✓DOI references
Found 2 DOI reference(s) in README -
✓Academic publication links
Links to: wiley.com -
○Committers with academic emails
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (12.0%) to scientific vocabulary
Repository
A Toolbox for Manipulating Biological Sequences in R
Basic Info
- Host: GitHub
- Owner: fkeck
- License: gpl-3.0
- Language: R
- Default Branch: master
- Homepage: https://fkeck.github.io/bioseq/
- Size: 1.41 MB
Statistics
- Stars: 23
- Watchers: 2
- Forks: 3
- Open Issues: 8
- Releases: 0
Metadata Files
README.md
bioseq: A Toolbox for Manipulating Biological Sequences in R
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The purpose of bioseq is to provide a collection of classes and functions for biological sequence manipulation in R. The package provides simple S3 classes for sequences that are suitable for inclusion in a data frame and that can be analysed using the dplyr grammar and other tidyverse tools.
Installation
You can install the development version of bioseq from GitHub with:
r
remotes::install_github("fkeck/bioseq")
Tutorials
There are two vignettes available to get started with the package:
- Introduction to the
bioseqpackage - Cleaning and exploring NCBI data with the
bioseqpackage
Citation
If you use bioseq please cite Keck F. (2020) Handling biological sequences in R with the bioseq package. Methods in Ecology and Evolution. doi:10.1111/2041-210X.13490
Owner
- Name: François Keck
- Login: fkeck
- Kind: user
- Location: Zürich, Switzerland
- Website: https://twitter.com/FrancoisKeck
- Repositories: 5
- Profile: https://github.com/fkeck
GitHub Events
Total
- Watch event: 2
Last Year
- Watch event: 2
Committers
Last synced: over 2 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| fkeck | f****k@g****m | 112 |
| ErdaradunGaztea | 3****a | 4 |
Issues and Pull Requests
Last synced: 11 months ago
All Time
- Total issues: 17
- Total pull requests: 1
- Average time to close issues: 28 days
- Average time to close pull requests: 1 day
- Total issue authors: 5
- Total pull request authors: 1
- Average comments per issue: 0.82
- Average comments per pull request: 1.0
- Merged pull requests: 1
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- fkeck (13)
- archavan (1)
- kenscripts (1)
- pedrosenna (1)
- nysdan (1)
Pull Request Authors
- ErdaradunGaztea (1)
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
-
Total downloads:
- cran 432 last-month
- Total docker downloads: 21,613
- Total dependent packages: 2
- Total dependent repositories: 2
- Total versions: 4
- Total maintainers: 1
cran.r-project.org: bioseq
A Toolbox for Manipulating Biological Sequences
- Homepage: https://fkeck.github.io/bioseq/
- Documentation: http://cran.r-project.org/web/packages/bioseq/bioseq.pdf
- License: GPL-3
-
Latest release: 0.1.4
published almost 4 years ago
Rankings
Maintainers (1)
Dependencies
- R >= 3.1.0 depends
- ape * imports
- crayon * imports
- dplyr * imports
- methods * imports
- pillar * imports
- readr * imports
- rlang * imports
- stringdist * imports
- stringi * imports
- stringr * imports
- tibble * imports
- vctrs * imports
- covr * suggests
- knitr * suggests
- rmarkdown * suggests
- testthat >= 2.1.0 suggests