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opentree

Python package for working with Open Tree of Life webservices and artifacts. Importable as opentree

https://github.com/opentreeoflife/python-opentree

Science Score: 36.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    1 of 4 committers (25.0%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (12.2%) to scientific vocabulary
Last synced: 10 months ago · JSON representation

Repository

Python package for working with Open Tree of Life webservices and artifacts. Importable as opentree

Basic Info
  • Host: GitHub
  • Owner: OpenTreeOfLife
  • License: bsd-2-clause
  • Language: Python
  • Default Branch: main
  • Size: 3.91 MB
Statistics
  • Stars: 8
  • Watchers: 5
  • Forks: 6
  • Open Issues: 3
  • Releases: 2
Created over 6 years ago · Last pushed about 1 year ago
Metadata Files
Readme License

README.md

python-opentree

PyPI version Build Status Documentation codecov NSF-1759846 NSF-1759838

This package is a python library designed to make it easier to work with web services and data resources associated with the Open Tree of Life project. The git repo is at https://github.com/OpenTreeOfLife/python-opentree.

Please refer to this markdown document or opentree’s documentation website https://opentree.readthedocs.io/en/latest/install.html for more details on installation instructions, function usage, running tutorials, real life examples, and tools for developers.

If you have questions or comments, submit a GitHub issue or email ejmctavish ucmerced.edu.

For examples scripts see: https://opentree.readthedocs.io/en/latest/running_examples.html

For example Jupyter notebooks see: https://opentree.readthedocs.io/en/latest/notebooks.html

SSB 2020 workshop curriculum is posted at: Open Tree workshop at the 2020 SSB Meeting in Gainesville, FL.

If you use python-opentree, please cite McTavish et al. 2021, Systematic Biology

Owner

  • Name: OpenTreeOfLife
  • Login: OpenTreeOfLife
  • Kind: organization

GitHub Events

Total
  • Issues event: 2
  • Issue comment event: 2
  • Push event: 2
  • Pull request event: 3
  • Fork event: 1
Last Year
  • Issues event: 2
  • Issue comment event: 2
  • Push event: 2
  • Pull request event: 3
  • Fork event: 1

Committers

Last synced: over 2 years ago

All Time
  • Total Commits: 326
  • Total Committers: 4
  • Avg Commits per committer: 81.5
  • Development Distribution Score (DDS): 0.546
Past Year
  • Commits: 6
  • Committers: 1
  • Avg Commits per committer: 6.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
Emily Jane McTavish e****h@g****m 148
Mark T. Holder m****r@g****m 116
Luna Sare s****a@g****m 60
Matthias Bussonnier m****r@u****u 2
Committer Domains (Top 20 + Academic)
ucmerced.edu: 1

Issues and Pull Requests

Last synced: 11 months ago

All Time
  • Total issues: 5
  • Total pull requests: 26
  • Average time to close issues: 6 months
  • Average time to close pull requests: 15 days
  • Total issue authors: 4
  • Total pull request authors: 6
  • Average comments per issue: 4.0
  • Average comments per pull request: 0.73
  • Merged pull requests: 24
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 1
  • Pull requests: 2
  • Average time to close issues: 16 days
  • Average time to close pull requests: 8 days
  • Issue authors: 1
  • Pull request authors: 2
  • Average comments per issue: 1.0
  • Average comments per pull request: 0.5
  • Merged pull requests: 2
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • snacktavish (2)
  • harmsm (1)
  • cfz1998 (1)
  • mdrishti (1)
Pull Request Authors
  • snacktavish (13)
  • mtholder (6)
  • LunaSare (3)
  • mdrishti (2)
  • Carreau (2)
  • harmsm (1)
Top Labels
Issue Labels
Pull Request Labels

Packages

  • Total packages: 2
  • Total downloads:
    • pypi 38 last-month
  • Total dependent packages: 0
    (may contain duplicates)
  • Total dependent repositories: 2
    (may contain duplicates)
  • Total versions: 5
  • Total maintainers: 2
pypi.org: opentree

Library for interacting with Open Tree of Life resources

  • Versions: 4
  • Dependent Packages: 0
  • Dependent Repositories: 2
  • Downloads: 38 Last month
Rankings
Dependent packages count: 10.1%
Dependent repos count: 11.6%
Forks count: 14.2%
Average: 16.5%
Downloads: 21.4%
Stargazers count: 25.0%
Maintainers (1)
mtholder
Last synced: 11 months ago
spack.io: py-opentree

Library for interacting with Open Tree of Life resources.

  • Versions: 1
  • Dependent Packages: 0
  • Dependent Repositories: 0
Rankings
Dependent repos count: 0.0%
Average: 28.5%
Dependent packages count: 57.0%
Maintainers (1)
snehring
Last synced: 10 months ago

Dependencies

requirements.txt pypi
  • DendroPy >=4.4.0
  • m2r *
  • requests >=2.18
  • setuptools *
setup.py pypi
  • DendroPy >=4.4.0
  • requests >=2.18
  • setuptools *