IMIX
Integrative genomics using a multivariate mixture model framework
Science Score: 13.0%
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○CITATION.cff file
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○codemeta.json file
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○.zenodo.json file
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✓DOI references
Found 1 DOI reference(s) in README -
○Academic publication links
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○Committers with academic emails
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○Scientific vocabulary similarity
Low similarity (7.5%) to scientific vocabulary
Repository
Integrative genomics using a multivariate mixture model framework
Basic Info
- Host: GitHub
- Owner: ziqiaow
- Language: R
- Default Branch: master
- Size: 2.78 MB
Statistics
- Stars: 7
- Watchers: 1
- Forks: 6
- Open Issues: 0
- Releases: 0
Metadata Files
README.md
IMIX
R package for integrative genomics analysis using a multivariate mixture model framework. This package is also available in R/Cran: https://cran.rstudio.com/web/packages/IMIX/index.html.
Reference
- Ziqiao Wang and Peng Wei. IMIX: A multivariate mixture model approach to integrative analysis of multiple types of omics data. Bioinformatics. 2021 Apr 1;36(22-23):5439-5447. doi: 10.1093/bioinformatics/btaa1001. PMID: 33258948; PMCID: PMC8016490.
Installation
Install the IMIX package via github
if(!requireNamespace("devtools", quietly = TRUE))
install.packages("devtools")
devtools::install_github("ziqiaow/IMIX",build_vignettes=TRUE)
To get started with the package
Load the package and open the package vignette:
library("IMIX")
vignette("IMIX")
There will be examples for all the functions in IMIX package in vignette. If you have any question, use help().
Have fun with IMIX :smiley:
Owner
- Name: Ziqiao Wang
- Login: ziqiaow
- Kind: user
- Location: Baltimore, MD
- Company: Johns Hopkins University
- Repositories: 2
- Profile: https://github.com/ziqiaow
PhD in Biostatistics. My research focuses on high dimensional data analysis, polygenic risk score, integrative genomics, and mixture models.
GitHub Events
Total
Last Year
Committers
Last synced: almost 3 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| Ziqiao Wang | w****t@g****m | 75 |
Issues and Pull Requests
Last synced: 12 months ago
All Time
- Total issues: 0
- Total pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Total issue authors: 0
- Total pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
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Top Labels
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Packages
- Total packages: 1
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Total downloads:
- cran 272 last-month
- Total docker downloads: 21,613
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 3
- Total maintainers: 1
cran.r-project.org: IMIX
Gaussian Mixture Model for Multi-Omics Data Integration
- Homepage: https://github.com/ziqiaow/IMIX
- Documentation: http://cran.r-project.org/web/packages/IMIX/IMIX.pdf
- License: GPL-2
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Latest release: 1.1.5
published about 4 years ago
Rankings
Maintainers (1)
Dependencies
- R >= 3.5 depends
- MASS * imports
- crayon * imports
- ggplot2 * imports
- mclust * imports
- mixtools * imports
- mvtnorm * imports
- stats * imports
- utils * imports