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lassopv

Nonparametric P-Value Estimation for Predictors in Lasso

https://github.com/lingfeiwang/lassopv

Science Score: 20.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ○
    codemeta.json file
  • ○
    .zenodo.json file
  • ○
    DOI references
  • ✓
    Academic publication links
    Links to: arxiv.org
  • ✓
    Committers with academic emails
    1 of 2 committers (50.0%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (4.4%) to scientific vocabulary

Keywords

feature-selection lasso linear-regression p-value variable-selection
Last synced: 6 months ago · JSON representation

Repository

Nonparametric P-Value Estimation for Predictors in Lasso

Basic Info
  • Host: GitHub
  • Owner: lingfeiwang
  • License: gpl-3.0
  • Language: R
  • Default Branch: master
  • Homepage:
  • Size: 21.5 KB
Statistics
  • Stars: 2
  • Watchers: 2
  • Forks: 1
  • Open Issues: 0
  • Releases: 0
Topics
feature-selection lasso linear-regression p-value variable-selection
Created about 9 years ago · Last pushed over 3 years ago
Metadata Files
Readme License

README 

This package estimates the p-values for predictors x against target variable y in lasso regression, using the regularization strength when each predictor enters the active set of regularization path for the first time as the statistic. This is based on the assumption that predictors (of the same variance) that (first) become active earlier tend to be more significant. Three null distributions are supported: normal and spherical, which are computed separately for each predictor and analytically under approximation, which aims at efficiency and accuracy for small p-values.

Reference:
Lingfei Wang and Tom Michoel, Controlling false discoveries in Bayesian gene networks with lasso regression p-values, https://arxiv.org/pdf/1701.07011. 2017, 2018.

Owner

  • Name: Lingfei Wang
  • Login: lingfeiwang
  • Kind: user
  • Location: Cambridge, MA
  • Company: Massachusetts General Hospital

GitHub Events

Total
  • Watch event: 1
Last Year
  • Watch event: 1

Committers

Last synced: 7 months ago

All Time
  • Total Commits: 8
  • Total Committers: 2
  • Avg Commits per committer: 4.0
  • Development Distribution Score (DDS): 0.375
Past Year
  • Commits: 0
  • Committers: 0
  • Avg Commits per committer: 0.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
Lingfei Wang L****g@e****k 5
Lingfei Wang L****b@o****m 3
Committer Domains (Top 20 + Academic)
ed.ac.uk: 1

Issues and Pull Requests

Last synced: 7 months ago

All Time
  • Total issues: 0
  • Total pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Total issue authors: 0
  • Total pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
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Top Labels
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Packages

  • Total packages: 2
  • Total downloads:
    • cran 250 last-month
  • Total docker downloads: 48
  • Total dependent packages: 0
    (may contain duplicates)
  • Total dependent repositories: 1
    (may contain duplicates)
  • Total versions: 4
  • Total maintainers: 1
cran.r-project.org: lassopv

Nonparametric P-Value Estimation for Predictors in Lasso

  • Versions: 3
  • Dependent Packages: 0
  • Dependent Repositories: 1
  • Downloads: 250 Last month
  • Docker Downloads: 48
Rankings
Forks count: 21.0%
Dependent repos count: 24.0%
Dependent packages count: 28.8%
Stargazers count: 30.9%
Average: 33.0%
Downloads: 60.6%
Maintainers (1)
Lingfei.Wang.github@outlook.com
Last synced: 6 months ago
conda-forge.org: r-lassopv
  • Versions: 1
  • Dependent Packages: 0
  • Dependent Repositories: 0
Rankings
Dependent repos count: 34.0%
Dependent packages count: 51.2%
Average: 51.3%
Forks count: 57.4%
Stargazers count: 62.4%
Last synced: 6 months ago

Dependencies

lassopv/DESCRIPTION cran
  • R >= 2.10 depends
  • lars * imports
  • stats * imports