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PublicationBias

R package for publication bias in meta-analysis

https://github.com/mathurlabstanford/publicationbias

Science Score: 10.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ○
    codemeta.json file
  • ○
    .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    1 of 3 committers (33.3%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (6.6%) to scientific vocabulary
Last synced: 6 months ago · JSON representation

Repository

R package for publication bias in meta-analysis

Basic Info
Statistics
  • Stars: 0
  • Watchers: 1
  • Forks: 0
  • Open Issues: 0
  • Releases: 2
Created over 6 years ago · Last pushed over 2 years ago
Metadata Files
Readme

README.md

PublicationBias

R-CMD-check <!-- badges: end -->

PublicationBias is an R package that provides bias correction and sensitivity analysis for publication bias in meta-analyses (per Mathur & VanderWeele, 2020).

Installation

You can install PublicationBias from CRAN with: install.packages("PublicationBias")

You can install the development version of PublicationBias from GitHub with: ``` r

install.packages("devtools")

devtools::install_github("mathurlabstanford/PublicationBias") ```

Example

Start by generating some example data from the metafor package.

r library(PublicationBias) dat <- metafor::escalc(measure = "RR", ai = tpos, bi = tneg, ci = cpos, di = cneg, data = dat.bcg)

Calculate the meta-analytic effect size estimate, correcting for an assumed selection ratio of 5 (i.e., affirmative results are 5x more likely to be published than nonaffirmative ones).

r pubbias_meta(yi = dat$yi, vi = dat$vi, selection_ratio = 5, model_type = "fixed", favor_positive = FALSE)

Calculate how high the selection ratio would need to be to attenuate the effect size estimate to the null.

r pubbias_svalue(yi = dat$yi, vi = dat$vi, q = 0, model_type = "fixed", favor_positive = FALSE)

Owner

  • Name: Mathur Lab at Stanford
  • Login: mathurlabstanford
  • Kind: organization
  • Email: mathurlabstanford@gmail.com

GitHub Events

Total
Last Year

Committers

Last synced: over 2 years ago

All Time
  • Total Commits: 76
  • Total Committers: 3
  • Avg Commits per committer: 25.333
  • Development Distribution Score (DDS): 0.316
Past Year
  • Commits: 38
  • Committers: 2
  • Avg Commits per committer: 19.0
  • Development Distribution Score (DDS): 0.105
Top Committers
Name Email Commits
Mika Braginsky m****r@g****m 52
Maya Mathur m****r@s****u 20
Peter Solymos p****s@g****m 4
Committer Domains (Top 20 + Academic)
stanford.edu: 1

Issues and Pull Requests

Last synced: 7 months ago

All Time
  • Total issues: 4
  • Total pull requests: 0
  • Average time to close issues: 8 months
  • Average time to close pull requests: N/A
  • Total issue authors: 2
  • Total pull request authors: 0
  • Average comments per issue: 0.5
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • mikabr (3)
  • barracuda156 (1)
Pull Request Authors
Top Labels
Issue Labels
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • cran 395 last-month
  • Total docker downloads: 42,005
  • Total dependent packages: 1
  • Total dependent repositories: 1
  • Total versions: 7
  • Total maintainers: 1
cran.r-project.org: PublicationBias

Sensitivity Analysis for Publication Bias in Meta-Analyses

  • Versions: 7
  • Dependent Packages: 1
  • Dependent Repositories: 1
  • Downloads: 395 Last month
  • Docker Downloads: 42,005
Rankings
Docker downloads count: 0.6%
Dependent packages count: 18.1%
Average: 23.6%
Dependent repos count: 23.9%
Forks count: 27.8%
Stargazers count: 34.5%
Downloads: 36.8%
Maintainers (1)
peter@analythium.io
Last synced: 7 months ago

Dependencies

.github/workflows/R-CMD-check.yaml actions
  • actions/checkout v3 composite
  • r-lib/actions/check-r-package v2 composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-r-dependencies v2 composite
.github/workflows/pkgdown.yaml actions
  • JamesIves/github-pages-deploy-action v4.4.1 composite
  • actions/checkout v3 composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-r-dependencies v2 composite
DESCRIPTION cran
  • R >= 4.1.0 depends
  • Rdpack * imports
  • dplyr * imports
  • ggplot2 * imports
  • glue * imports
  • lifecycle * imports
  • metabias * imports
  • metafor * imports
  • rlang * imports
  • robumeta * imports
  • stats * imports
  • purrr * suggests
  • testthat >= 3.0.0 suggests
  • withr * suggests