SAMtool
Model-based management procedures and conditioning model developed for more data-intensive applications.
Science Score: 26.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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○Academic publication links
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○Committers with academic emails
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (13.2%) to scientific vocabulary
Last synced: 11 months ago
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JSON representation
Repository
Model-based management procedures and conditioning model developed for more data-intensive applications.
Basic Info
- Host: GitHub
- Owner: Blue-Matter
- License: gpl-3.0
- Language: R
- Default Branch: master
- Homepage: https://samtool.openmse.com/
- Size: 129 MB
Statistics
- Stars: 3
- Watchers: 3
- Forks: 0
- Open Issues: 8
- Releases: 4
Created almost 6 years ago
· Last pushed 11 months ago
Metadata Files
Readme
Changelog
License
README.Rmd
---
output: github_document
---
```{r, include = FALSE}
library(badger)
knitr::opts_chunk$set(
collapse = TRUE,
comment = "#>",
fig.path = "man/figures/README-",
out.width = "100%"
)
```
# SAMtool 
[](https://CRAN.R-project.org/package=SAMtool)
[](https://github.com/Blue-Matter/SAMtool/actions)
`r badge_devel("Blue-Matter/SAMtool", "blue")`
[](https://github.com/Blue-Matter/SAMtool/actions/workflows/R-CMD-check.yaml)
The Stock Assessment Methods toolkit (`SAMtool`) is a collection of assessment methods and management procedures that have been developed for more data-intensive applications. This package includes the Rapid Conditioning Model for conditioning operating models in data-moderate and data-rich fisheries.
SAMtool is part of the `openMSE` collection of packages.
You can learn more about the `openMSE` packages at the [openMSE documentation site](https://openMSE.com).
## Installation
You can install the released version of SAMtool from [CRAN](https://CRAN.R-project.org) with:
``` r
install.packages("SAMtool")
```
And the development version from [GitHub](https://github.com/Blue-Matter/SAMtool) with:
``` r
# install.packages("remotes")
remotes::install_github("Blue-Matter/SAMtool")
```
Owner
- Name: Blue Matter Science
- Login: Blue-Matter
- Kind: organization
- Location: Vancouver, Canada
- Website: https://www.bluematterscience.com/
- Repositories: 8
- Profile: https://github.com/Blue-Matter
GitHub Events
Total
- Issues event: 6
- Delete event: 1
- Issue comment event: 2
- Push event: 46
- Create event: 2
Last Year
- Issues event: 6
- Delete event: 1
- Issue comment event: 2
- Push event: 46
- Create event: 2
Committers
Last synced: over 2 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| Quang Huynh | q****g@b****m | 394 |
| Adrian | a****k@g****m | 5 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 11 months ago
All Time
- Total issues: 60
- Total pull requests: 0
- Average time to close issues: about 1 month
- Average time to close pull requests: N/A
- Total issue authors: 6
- Total pull request authors: 0
- Average comments per issue: 0.58
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 2
- Pull requests: 0
- Average time to close issues: about 5 hours
- Average time to close pull requests: N/A
- Issue authors: 1
- Pull request authors: 0
- Average comments per issue: 0.5
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- quang-huynh (32)
- tcarruth (19)
- AdrianHordyk (6)
- nikolaifish (2)
- MauroMardones (1)
- Henning-Winker (1)
Pull Request Authors
Top Labels
Issue Labels
enhancement (12)
bug (11)
Pull Request Labels
Packages
- Total packages: 1
-
Total downloads:
- cran 411 last-month
- Total docker downloads: 141
- Total dependent packages: 1
- Total dependent repositories: 2
- Total versions: 28
- Total maintainers: 1
cran.r-project.org: SAMtool
Stock Assessment Methods Toolkit
- Homepage: https://openmse.com
- Documentation: http://cran.r-project.org/web/packages/SAMtool/SAMtool.pdf
- License: GPL-3
-
Latest release: 1.8.2
published 11 months ago
Rankings
Docker downloads count: 17.0%
Dependent packages count: 18.1%
Downloads: 19.2%
Dependent repos count: 19.3%
Average: 21.5%
Stargazers count: 27.8%
Forks count: 27.8%
Maintainers (1)
Last synced:
11 months ago
Dependencies
.github/workflows/check-full.yaml
actions
- actions/checkout v3 composite
- r-lib/actions/check-r-package v2 composite
- r-lib/actions/setup-pandoc v2 composite
- r-lib/actions/setup-r v2 composite
- r-lib/actions/setup-r-dependencies v2 composite
.github/workflows/rchk.yml
actions
- actions/checkout v3 composite
- r-lib/actions/run-rchk v2 composite
- r-lib/actions/setup-r-dependencies v2 composite
.github/workflows/pkgdown.yaml
actions
- actions/cache v2 composite
- actions/checkout v2 composite
- r-lib/actions/setup-pandoc v1 composite
- r-lib/actions/setup-r v1 composite
.github/workflows/valgrind.yml
actions
- actions/checkout v2 composite
DESCRIPTION
cran
- MSEtool >= 3.0.0 depends
- R >= 3.5.0 depends
- TMB >= 1.9.0 imports
- corpcor * imports
- dplyr * imports
- gplots * imports
- graphics * imports
- methods * imports
- pbapply * imports
- rmarkdown * imports
- snowfall * imports
- stats * imports
- utils * imports
- vars * imports
- Gmisc * suggests
- abind * suggests
- caret * suggests
- covr * suggests
- ggplot2 * suggests
- knitr * suggests
- mvtnorm * suggests
- numDeriv * suggests
- reshape2 * suggests
- shiny * suggests
- testthat * suggests
- tmbstan * suggests
- usethis * suggests