Science Score: 23.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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○codemeta.json file
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○.zenodo.json file
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✓DOI references
Found 2 DOI reference(s) in README -
✓Academic publication links
Links to: sciencedirect.com -
○Committers with academic emails
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (13.9%) to scientific vocabulary
Repository
Row And Position of Tracheid Organizer in R
Basic Info
- Host: GitHub
- Owner: the-Hull
- Language: R
- Default Branch: master
- Homepage: https://the-hull.github.io/raptor/
- Size: 3.9 MB
Statistics
- Stars: 2
- Watchers: 3
- Forks: 0
- Open Issues: 1
- Releases: 0
Metadata Files
README.md
RAPTOR 
Row And Position Tracheid Organizer
Description:
Performs wood cell anatomical data analyses on spatially explicit xylem (tracheids) data sets derived from wood anatomical thin sections. The package includes functions for the visualization, alignment and detection of continuous tracheid radial file (defines as rows) and tracheid position within an annual ring of coniferous species. This package is designed to use elaborate cell output, like provided with ROXAS (von Arx and Carrer, 2014). The package has been validated for Picea abies, Larix Siberica, Pinus cembra and Pinus sylvestris.
Important Notes:
This repository contains the release version of RAPTOR for submission to the Comprehensive R Archive and Network (CRAN) and accompanies the manuscript Peters et al. (2018). This document outlines the package installation process and provides initial steps for using the package's functions via examples provided in the package documentation.
Installation:
A development version of RAPTOR can be installed and used via
```r remotes::install_github("the-Hull/RAPTOR")
library(RAPTOR)
```
The stable CRAN version can be installed using
```r
install.packages("RAPTOR")
library(RAPTOR)
```
Usage:
The package's functions are to be executed sequentially (cf. manuscript):
- is.raptor()
- graph.cells()
- align()
- first.cell()
- pos.det()
- write.output()
- batch.mode() is a convenient 'wrapper' function streamlining steps 1 through 6
- anatomy.data calls complimentary example data sets
Each function is complimented by detailed documentation, which can be accessed by calling a function's name preceded by a question mark, i.e.:
"?is.raptor()".
Simple examples illustrating each function's usage are provided at the bottom of each documentation file. The functions can be tested and explored using the complimentary example data sets (see manuscript or execute "?anatomy.data" in an R session.)
To begin exploring the package, navigate to Examples in the documentation of "?is.raptor()":
```r
validating example data
input<-example.data(species="LOT_PICEA")
input<-is.raptor(input, str=TRUE)
input
```
Contributors:
- Richard L. Peters richardlouispeters3@hotmail.com [aut, cre, cph]
- Daniel Balanzategui [ctr]
- Alexander G. Hurley [ctr]
- Georg von Arx [ctr]
- Angela Luisa Prendin [ctr]
- Henri E. Cuny [ctr]
- Jesper Bjoerklund [ctr]
- David C. Frank [ctr]
- Patrick Fonti [ths, ctr, fnd]
Please note that the 'RAPTOR' project is released with a Contributor Code of Conduct. By contributing to this project, you agree to abide by its terms.
Citation
Please cite this work as:
Peters, R.L., Balanzategui, D., Hurley, A.G., von Arx, G., Prendin, A.L., Cuny, H.E., Björklund, J., Frank, D.C. and Fonti, P., 2018. RAPTOR: Row and position tracheid organizer in R. Dendrochronologia, 47, pp.10-16.
Owner
- Name: Alexander Hurley
- Login: the-Hull
- Kind: user
- Location: Berlin, DE
- Website: aglhurley.rbind.io
- Repositories: 4
- Profile: https://github.com/the-Hull
Ecohydrologist and datanaut using #rstats
GitHub Events
Total
Last Year
Committers
Last synced: almost 3 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| Alex Hurley | t****l | 70 |
| Richard | r****s@w****h | 9 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: over 2 years ago
All Time
- Total issues: 5
- Total pull requests: 1
- Average time to close issues: 10 months
- Average time to close pull requests: 19 days
- Total issue authors: 2
- Total pull request authors: 1
- Average comments per issue: 1.2
- Average comments per pull request: 0.0
- Merged pull requests: 1
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- the-Hull (4)
- elenaWWD (1)
Pull Request Authors
- Richardlouispeters3 (1)
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
-
Total downloads:
- cran 205 last-month
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 2
- Total maintainers: 1
cran.r-project.org: RAPTOR
Row and Position Tracheid Organizer
- Homepage: https://the-hull.github.io/raptor/
- Documentation: http://cran.r-project.org/web/packages/RAPTOR/RAPTOR.pdf
- License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
-
Latest release: 1.0.1
published over 6 years ago
Rankings
Maintainers (1)
Dependencies
- R >= 3.4.0 depends
- grDevices * imports
- graphics * imports
- mgcv * imports
- stats * imports
- utils * imports
- testthat * suggests