ingranalyze
Influence graph analysis, consistency check, diagnosis, repair and prediction
Science Score: 10.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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○codemeta.json file
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○.zenodo.json file
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○DOI references
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○Academic publication links
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✓Committers with academic emails
2 of 3 committers (66.7%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (8.8%) to scientific vocabulary
Keywords
Keywords from Contributors
Repository
Influence graph analysis, consistency check, diagnosis, repair and prediction
Basic Info
- Host: GitHub
- Owner: bioasp
- License: gpl-3.0
- Language: Python
- Default Branch: master
- Homepage: bioasp.github.io/ingranalyze
- Size: 84 KB
Statistics
- Stars: 4
- Watchers: 2
- Forks: 0
- Open Issues: 0
- Releases: 0
Topics
Metadata Files
README.md
Warning
Ingranalyze is not maintained anymore. You might want to consider Iggy as an alternatives for current work.
Installation
You can install ingranalyze by running:
$ pip3 install --user ingranalyze
On Linux the executable script can then be found in ~/.local/bin
and on MacOS the script is under /Users/YOURUSERNAME/Library/Python/3.2/bin.
Usage
Typical usage is:
$ ingranalyze.py --mics --repair 5 networkfile observationfile
For more options you can ask for help as follows:
$ ingranalyze.py -h
usage: ingranalyze.py [-h] [--mics] [--repair {1,2,3,4,5}] [--list_repairs] networkfile observationfile
positional arguments:
networkfile influence graph in bioquali format
observationfile observations in bioquali format
optional arguments:
-h, --help show this help message and exit
--mics compute minimal inconsistent cores
--repair {1,2,3,4,5} choose repair method: 1 flip observed variations, 2
flip influences, 3 define network nodes as inputs, 4
define network nodes as input in an experiment (use
only in case of multiple experiments), 5 add
influences. default is 3
--list_repairs compute all minimal repair sets
Samples
Sample files for yeast are available here: yeast_guelzim.net and yeast_snf2.obs
Owner
- Name: BioASP
- Login: bioasp
- Kind: organization
- Email: bioasp@gmail.com
- Website: bioasp.github.io
- Repositories: 16
- Profile: https://github.com/bioasp
ASP-based software for Systems Biology
GitHub Events
Total
Last Year
Committers
Last synced: almost 3 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| Sven Thiele | s****8@g****m | 36 |
| Sven Thiele | t****s@p****e | 2 |
| Sven Thiele | s****e@u****e | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 11 months ago
All Time
- Total issues: 2
- Total pull requests: 2
- Average time to close issues: about 1 year
- Average time to close pull requests: less than a minute
- Total issue authors: 2
- Total pull request authors: 1
- Average comments per issue: 2.5
- Average comments per pull request: 0.0
- Merged pull requests: 2
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- sthiele (1)
- akittas (1)
Pull Request Authors
- sthiele (2)
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
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Total downloads:
- pypi 5 last-month
- Total dependent packages: 0
- Total dependent repositories: 3
- Total versions: 10
- Total maintainers: 1
pypi.org: ingranalyze
Influence graph analysis, consistency check, diagnosis, repair and prediction.
- Homepage: http://bioasp.github.io/ingranalyze/
- Documentation: https://ingranalyze.readthedocs.io/
- License: GPLv3+
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Latest release: 1.5.6
published over 7 years ago
Rankings
Maintainers (1)
Dependencies
- pyasp *