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loompy

Python implementation of the Loom file format - http://loompy.org

https://github.com/linnarsson-lab/loompy

Science Score: 23.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ○
    .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    2 of 16 committers (12.5%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (2.0%) to scientific vocabulary

Keywords from Contributors

transcriptome bioinformatics scrna-seq scverse
Last synced: 10 months ago · JSON representation

Repository

Python implementation of the Loom file format - http://loompy.org

Basic Info
  • Host: GitHub
  • Owner: linnarsson-lab
  • License: bsd-2-clause
  • Language: Python
  • Default Branch: master
  • Homepage:
  • Size: 19.1 MB
Statistics
  • Stars: 144
  • Watchers: 7
  • Forks: 37
  • Open Issues: 39
  • Releases: 22
Created over 9 years ago · Last pushed over 1 year ago
Metadata Files
Readme License

README.md

loompy v3.0

⭐ Loompy v3.0 was released Sep. 24, 2019!

To get started, head over to the documentation!

Loom, loompy, and the loom-viewer are being developed by members of the Linnarsson Lab.

Owner

  • Name: Linnarsson Lab
  • Login: linnarsson-lab
  • Kind: organization
  • Email: sten.linnarsson@ki.se

Software developed by members of the Linnarsson lab at Karolinska Institutet

GitHub Events

Total
  • Create event: 1
  • Release event: 1
  • Issues event: 10
  • Watch event: 4
  • Issue comment event: 12
  • Push event: 2
Last Year
  • Create event: 1
  • Release event: 1
  • Issues event: 10
  • Watch event: 4
  • Issue comment event: 12
  • Push event: 2

Committers

Last synced: over 2 years ago

All Time
  • Total Commits: 502
  • Total Committers: 16
  • Avg Commits per committer: 31.375
  • Development Distribution Score (DDS): 0.267
Past Year
  • Commits: 8
  • Committers: 1
  • Avg Commits per committer: 8.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
Sten Linnarsson s****n@k****e 368
pl-ki p****g@k****e 58
Gioele La Manno g****o@g****m 39
Job van der Zwan j****n@g****m 16
Philipp A f****p@w****e 6
astaric a****c@g****m 4
Camiel Mannens c****m@l****l 2
Gert Hulselmans g****s@k****e 1
Rise Ooi i****i@l****p 1
Sten Linnarsson s****n@r****l 1
Valentine Svensson v@n****e 1
Wolfgang Kopp w****p@m****e 1
ejarmand e****d@u****u 1
jlikhuva j****a@a****u 1
Darío Hereñú m****a@g****m 1
Volker Bergen 3****n 1
Committer Domains (Top 20 + Academic)
ki.se: 2 alumni.stanford.edu: 1 ucsd.edu: 1 mdc-berlin.de: 1 nxn.se: 1 live.jp: 1 kuleuven.vib.be: 1 live.nl: 1

Issues and Pull Requests

Last synced: 11 months ago

All Time
  • Total issues: 101
  • Total pull requests: 11
  • Average time to close issues: 6 months
  • Average time to close pull requests: about 2 months
  • Total issue authors: 84
  • Total pull request authors: 9
  • Average comments per issue: 1.89
  • Average comments per pull request: 1.36
  • Merged pull requests: 7
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 3
  • Pull requests: 0
  • Average time to close issues: about 23 hours
  • Average time to close pull requests: N/A
  • Issue authors: 3
  • Pull request authors: 0
  • Average comments per issue: 0.33
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • slinnarsson (11)
  • simone-codeluppi (3)
  • denvercal1234GitHub (2)
  • honghh2018 (2)
  • VincentGardeux (2)
  • hmassalha (2)
  • FionaMoon (2)
  • pjb7687 (1)
  • rekado (1)
  • sayaneshome (1)
  • danli349 (1)
  • astrovsky01 (1)
  • vals (1)
  • maddemaddi (1)
  • marcRDM (1)
Pull Request Authors
  • slinnarsson (2)
  • JobLeonard (2)
  • jlikhuva (1)
  • kant (1)
  • gravitogen (1)
  • berquist (1)
  • VolkerBergen (1)
  • ghuls (1)
  • wkopp (1)
Top Labels
Issue Labels
loompy3 (5) loompy4 (3)
Pull Request Labels

Packages

  • Total packages: 3
  • Total downloads:
    • pypi 21,130 last-month
  • Total docker downloads: 2,646
  • Total dependent packages: 30
    (may contain duplicates)
  • Total dependent repositories: 202
    (may contain duplicates)
  • Total versions: 156
  • Total maintainers: 3
pypi.org: loompy

Work with Loom files for single-cell RNA-seq data

  • Versions: 147
  • Dependent Packages: 26
  • Dependent Repositories: 196
  • Downloads: 21,130 Last month
  • Docker Downloads: 2,646
Rankings
Dependent packages count: 0.6%
Dependent repos count: 1.1%
Docker downloads count: 1.5%
Downloads: 2.3%
Average: 3.1%
Stargazers count: 6.2%
Forks count: 6.6%
Maintainers (2)
slinnarsson pelonn
Last synced: 11 months ago
spack.io: py-loompy

Work with Loom files for single-cell RNA-seq data.

  • Versions: 1
  • Dependent Packages: 2
  • Dependent Repositories: 0
Rankings
Dependent repos count: 0.0%
Average: 15.9%
Stargazers count: 17.5%
Forks count: 17.8%
Dependent packages count: 28.1%
Maintainers (1)
adamjstewart
Last synced: 11 months ago
conda-forge.org: loompy
  • Versions: 8
  • Dependent Packages: 2
  • Dependent Repositories: 6
Rankings
Dependent repos count: 13.9%
Dependent packages count: 19.6%
Average: 23.5%
Forks count: 29.4%
Stargazers count: 31.2%
Last synced: 11 months ago

Dependencies

setup.py pypi
  • click *
  • h5py *
  • numba *
  • numpy *
  • scipy *
  • setuptools *