Science Score: 23.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
○.zenodo.json file
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○DOI references
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○Academic publication links
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✓Committers with academic emails
7 of 25 committers (28.0%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (4.9%) to scientific vocabulary
Keywords
bioinformatics
bioinformatics-pipeline
ngs
pipeline-submission-engine
Last synced: 11 months ago
·
JSON representation
Repository
A job submitter for Portable Encapsulated Projects
Basic Info
- Host: GitHub
- Owner: pepkit
- License: bsd-2-clause
- Language: Python
- Default Branch: master
- Homepage: http://looper.databio.org
- Size: 4.18 MB
Statistics
- Stars: 22
- Watchers: 2
- Forks: 7
- Open Issues: 18
- Releases: 37
Topics
bioinformatics
bioinformatics-pipeline
ngs
pipeline-submission-engine
Created over 8 years ago
· Last pushed over 1 year ago
Metadata Files
Readme
Contributing
License
Support
README.md
Looper is a pipeline submission engine. The typical use case is to run a bioinformatics pipeline across many different input samples. Instructions are in the documentation.
Owner
- Name: Portable Encapsulated Projects
- Login: pepkit
- Kind: organization
- Website: https://pep.databio.org
- Repositories: 43
- Profile: https://github.com/pepkit
Standardized sample metadata structure for biological research
GitHub Events
Total
- Create event: 4
- Release event: 2
- Issues event: 42
- Watch event: 3
- Issue comment event: 29
- Push event: 11
- Pull request event: 4
Last Year
- Create event: 4
- Release event: 2
- Issues event: 42
- Watch event: 3
- Issue comment event: 29
- Push event: 11
- Pull request event: 4
Committers
Last synced: almost 2 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| Vince Reuter | v****r@g****m | 903 |
| Michal Stolarczyk | s****3@g****m | 556 |
| nsheff | n****f | 472 |
| Donald Campbell | 1****r | 345 |
| nsheff | n****n@c****g | 138 |
| jpsmith5 | j****h@v****u | 105 |
| Andre Rendeiro | a****o@g****m | 94 |
| Simeon Carstens | s****s@t****o | 59 |
| Khoroshevskyi | s****0@g****m | 44 |
| Vince | v****r | 35 |
| Charles Dietz | c****z@c****t | 25 |
| ayobi | 1****i | 24 |
| jklughammer | j****r@c****t | 20 |
| aaron-gu | a****m@v****u | 19 |
| Zhihan Zhang | z****g@t****o | 9 |
| xuebingjie1990 | x****e@h****m | 8 |
| Aaron O'Brien | o****g@g****m | 4 |
| Nishant Jha | n****1@g****m | 3 |
| fhalbritter | f****r@c****t | 3 |
| olhakholod | o****d@g****m | 2 |
| Aaron Gu | 3****u | 2 |
| Bingjie Xue | b****r@c****u | 1 |
| Zhihan Zhang | 3****4 | 1 |
| Nikolaus Fortelny | n****y@n****t | 1 |
| mfarlik | m****k@c****t | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 11 months ago
All Time
- Total issues: 191
- Total pull requests: 88
- Average time to close issues: about 1 year
- Average time to close pull requests: about 1 month
- Total issue authors: 22
- Total pull request authors: 7
- Average comments per issue: 3.1
- Average comments per pull request: 1.2
- Merged pull requests: 79
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 27
- Pull requests: 3
- Average time to close issues: 2 months
- Average time to close pull requests: 11 minutes
- Issue authors: 4
- Pull request authors: 1
- Average comments per issue: 1.04
- Average comments per pull request: 0.0
- Merged pull requests: 3
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- nsheff (103)
- donaldcampbelljr (41)
- vreuter (14)
- nleroy917 (6)
- stolarczyk (3)
- khoroshevskyi (2)
- simeoncarstens (2)
- binbinZhao2017 (2)
- aaron-gu (2)
- arpanda (2)
- zhangzhen (1)
- joseverdezoto (1)
- ayobi (1)
- AllamSudhakara (1)
- jpsmith5 (1)
Pull Request Authors
- donaldcampbelljr (72)
- vreuter (13)
- nsheff (13)
- simeoncarstens (6)
- zz1874 (4)
- khoroshevskyi (4)
- ayobi (3)
Top Labels
Issue Labels
likely-solved (93)
bug (25)
docs (15)
enhancement (14)
question (14)
priority-low (12)
brainstorming (9)
good first issue (7)
tests (3)
wontfix (3)
messaging (3)
priority-high (2)
refactor (2)
versioning (1)
duplicate (1)
CI (1)
help wanted (1)
Pull Request Labels
versioning (2)
Packages
- Total packages: 2
-
Total downloads:
- pypi 231 last-month
- Total docker downloads: 18
-
Total dependent packages: 0
(may contain duplicates) -
Total dependent repositories: 8
(may contain duplicates) - Total versions: 36
- Total maintainers: 5
pypi.org: looper
A pipeline submission engine that parses sample inputs and submits pipelines for each sample.
- Homepage: https://github.com/pepkit/looper
- Documentation: https://looper.readthedocs.io/
- License: BSD2
-
Latest release: 2.0.1
published over 1 year ago
Rankings
Docker downloads count: 3.8%
Dependent repos count: 6.6%
Dependent packages count: 10.1%
Average: 10.7%
Forks count: 14.2%
Stargazers count: 14.2%
Downloads: 15.2%
Maintainers (4)
Last synced:
11 months ago
pypi.org: loopercli
A pipeline submission engine that parses sample inputs and submits pipelines for each sample.
- Homepage: https://github.com/pepkit/looper
- Documentation: https://loopercli.readthedocs.io/
- License: BSD2
-
Latest release: 0.12.6
published over 6 years ago
Rankings
Dependent repos count: 8.9%
Dependent packages count: 10.1%
Forks count: 14.2%
Stargazers count: 14.2%
Average: 17.5%
Downloads: 40.1%
Maintainers (4)
Last synced:
11 months ago
Dependencies
requirements/requirements-all.txt
pypi
- attmap >=0.12.7
- colorama >=0.3.9
- divvy >=0.5.0
- eido >=0.1.3
- jinja2 *
- logmuse >=0.2.0
- pandas >=0.20.2
- peppy >=0.31.0
- pyyaml >=3.12
- ubiquerg >=0.5.2
requirements/requirements-doc.txt
pypi
- looper *
- markdown-include *
- mkdocs >=1.0
- pydoc-markdown *
requirements/requirements-test.txt
pypi
- mock * test
- pytest * test
- pytest-cov * test
- pytest-remotedata * test
- veracitools * test
.github/workflows/python-publish.yml
actions
- actions/checkout v2 composite
- actions/setup-python v2 composite
.github/workflows/run-pytest.yml
actions
- actions/checkout v2 composite
- actions/setup-python v2 composite