looper - v1.7.0

[1.7.0] -- 2024-01-26

Added

--portable flag to looper report to create a portable version of the html report
--lump-j allows grouping samples into a defined number of jobs

Changed

--lumpn is now --lump-n
--lump is now --lump-s

- Python
Published by donaldcampbelljr over 2 years ago

looper - v1.7.0a1

v1.7.0a1

- Python
Published by donaldcampbelljr over 2 years ago

looper - v1.6.0

Looper v1.6.0 - Major Release

[1.6.0] -- 2023-12-22

Added

looper link creates symlinks for results grouped by record_identifier. It requires pipestat to be configured. #72
basic tab completion.

Changed

looper now works with pipestat v0.6.0 and greater.
looper table, check now use pipestat and therefore require pipestat configuration. #390
changed how looper configures pipestat #411
initializing pipeline interface also writes an example output_schema.yaml and count_lines.sh pipeline

Fixed

filtering via attributes that are integers.

- Python
Published by donaldcampbelljr over 2 years ago

looper - v1.6.0a3

v1.6.0a3

- Python
Published by donaldcampbelljr over 2 years ago

looper - v1.6.0a2

v1.6.0a2

- Python
Published by donaldcampbelljr over 2 years ago

looper - v1.6.0a1

v1.6.0a1

- Python
Published by donaldcampbelljr over 2 years ago

looper - v1.5.1

change --looper_config to --looper-config

- Python
Published by donaldcampbelljr almost 3 years ago

looper - v1.5.0

[1.5.0] --

Added

ability to use PEPs from PEPhub without downloading project #341
ability to specify pipeline interfaces inside looper config Looper Config
divvy re-integrated in looper
divvy inspect -p package
Looper will now check that the command path provided in the pipeline interface is callable before submitting.

Changed

initialization of generic pipeline interface available using subcommand init-piface
looper report will now use pipestat to generate browsable HTML reports if pipestat is configured.
looper now works with pipestat v0.5.0.
Removed --toggle-key functionality.
Allow for user to input single integer value for --sel-incl or --sel-excl

- Python
Published by donaldcampbelljr almost 3 years ago

looper - v1.4.3

[1.4.3] -- 2023-08-01

Fixed

Fix regression for var_templates expansion.

- Python
Published by donaldcampbelljr almost 3 years ago

looper - v1.4.2

fix expanding paths for var_templates.

- Python
Published by donaldcampbelljr almost 3 years ago

looper - v1.4.1

Eido compatibility fix

- Python
Published by donaldcampbelljr about 3 years ago

looper - v1.4.0

Release version 1.4.0

- Python
Published by nsheff about 3 years ago

looper - v1.3.2

Release version 1.3.2

- Python
Published by nsheff over 4 years ago

looper - v1.3.1

Release version 1.3.1

- Python
Published by nsheff about 5 years ago

looper - v1.3.0

- Python
Published by stolarczyk almost 6 years ago

looper - v1.2.1

- Python
Published by stolarczyk almost 6 years ago

looper - v1.2.0

- Python
Published by stolarczyk about 6 years ago

looper - v0.12.6

- Python
Published by stolarczyk over 6 years ago

looper - v0.12.5

- Python
Published by stolarczyk over 6 years ago

looper - v0.12.4

Release version 0.12.4

- Python
Published by stolarczyk about 7 years ago

looper - v0.12.3

For updates see docs/changelog.md.

- Python
Published by vreuter about 7 years ago

looper - v0.12.2

For updates see docs/changelog.md.

- Python
Published by vreuter about 7 years ago

looper - v0.12.1

Release version 0.12.1

- Python
Published by nsheff about 7 years ago

looper - v0.12.0

Release version 0.12.0

- Python
Published by nsheff about 7 years ago

looper - v0.11.1

Release version 0.11.1

- Python
Published by nsheff about 7 years ago

looper - v0.11

Release version 0.11

- Python
Published by nsheff over 7 years ago

looper - v0.10.0

Release version 0.10.0

Changes are listed in the CHANGELOG

- Python
Published by vreuter over 7 years ago

looper - v0.9.2

Release version 0.9.2

Changes are listed in the CHANGELOG

- Python
Published by nsheff over 7 years ago

looper - v0.9.1

Release version 0.9.1

- Python
Published by nsheff almost 8 years ago

looper - v0.9.0

Release version 0.9.0

pip install https://github.com/pepkit/looper/zipball/v0.9.0

Changes are listed in the CHANGELOG

- Python
Published by nsheff about 8 years ago