Surrogate
This is the development version of the CRAN R package Surrogate — Evaluation of Surrogate Endpoints in Clinical Trials
Science Score: 26.0%
This score indicates how likely this project is to be science-related based on various indicators:
-
○CITATION.cff file
-
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
-
○Academic publication links
-
○Committers with academic emails
-
○Institutional organization owner
-
○JOSS paper metadata
-
○Scientific vocabulary similarity
Low similarity (11.2%) to scientific vocabulary
Last synced: 11 months ago
·
JSON representation
Repository
This is the development version of the CRAN R package Surrogate — Evaluation of Surrogate Endpoints in Clinical Trials
Basic Info
Statistics
- Stars: 1
- Watchers: 0
- Forks: 4
- Open Issues: 4
- Releases: 11
Created over 3 years ago
· Last pushed about 1 year ago
Metadata Files
Readme
Changelog
README.Rmd
---
output: github_document
---
```{r, include = FALSE}
knitr::opts_chunk$set(
collapse = TRUE,
comment = "#>",
fig.path = "man/figures/README-",
out.width = "100%"
)
```
# Surrogate
[](https://github.com/florianstijven/Surrogate-development/actions/workflows/R-CMD-check.yaml)
In a clinical trial, it frequently occurs that the most credible
outcome to evaluate the effectiveness of a new therapy (the true endpoint) is
difficult to measure. In such a situation, it can be an effective strategy to
replace the true endpoint by a (bio)marker that is easier to measure and that
allows for a prediction of the treatment effect on the true endpoint (a
surrogate endpoint). The package 'Surrogate' allows for an evaluation of the
appropriateness of a candidate surrogate endpoint based on the meta-analytic,
information-theoretic, and causal-inference frameworks. Part of this software
has been developed using funding provided from the European Union's Seventh
Framework Programme for research, technological development and demonstration
(Grant Agreement no 602552), the Special Research Fund (BOF) of Hasselt
University (BOF-number: BOF2OCPO3), GlaxoSmithKline Biologicals, Baekeland
Mandaat (HBC.2022.0145), and Johnson & Johnson Innovative Medicine.
## Installation
You can install the development version of Surrogate from [GitHub](https://github.com/) with:
``` r
# install.packages("devtools")
devtools::install_github("florianstijven/Surrogate-development")
```
Owner
- Login: florianstijven
- Kind: user
- Repositories: 1
- Profile: https://github.com/florianstijven
GitHub Events
Total
- Create event: 4
- Release event: 3
- Issues event: 13
- Delete event: 1
- Push event: 29
- Pull request event: 5
- Fork event: 1
Last Year
- Create event: 4
- Release event: 3
- Issues event: 13
- Delete event: 1
- Push event: 29
- Pull request event: 5
- Fork event: 1
Committers
Last synced: over 2 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| florianstijven | f****n@g****m | 101 |
| Wim Van der Elst | W****t@g****m | 51 |
Issues and Pull Requests
Last synced: 11 months ago
All Time
- Total issues: 9
- Total pull requests: 2
- Average time to close issues: 13 days
- Average time to close pull requests: about 20 hours
- Total issue authors: 3
- Total pull request authors: 1
- Average comments per issue: 0.0
- Average comments per pull request: 0.0
- Merged pull requests: 2
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 9
- Pull requests: 2
- Average time to close issues: 13 days
- Average time to close pull requests: about 20 hours
- Issue authors: 3
- Pull request authors: 1
- Average comments per issue: 0.0
- Average comments per pull request: 0.0
- Merged pull requests: 2
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- florianstijven (11)
- stefano-trebeschi (3)
- tnagler (1)
- ablommae (1)
Pull Request Authors
- DriesDWitte (3)
- gdeliorman (2)
- florianstijven (1)
- WimVDE001 (1)
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
-
Total downloads:
- cran 385 last-month
- Total dependent packages: 1
- Total dependent repositories: 0
- Total versions: 63
- Total maintainers: 1
cran.r-project.org: Surrogate
Evaluation of Surrogate Endpoints in Clinical Trials
- Homepage: https://github.com/florianstijven/Surrogate-development
- Documentation: http://cran.r-project.org/web/packages/Surrogate/Surrogate.pdf
- License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
-
Latest release: 3.4.1
published about 1 year ago
Rankings
Downloads: 15.1%
Dependent packages count: 18.7%
Average: 23.1%
Dependent repos count: 35.5%
Maintainers (1)
Last synced:
11 months ago
Dependencies
.github/workflows/R-CMD-check.yaml
actions
- actions/checkout v3 composite
- r-lib/actions/check-r-package v2 composite
- r-lib/actions/setup-pandoc v2 composite
- r-lib/actions/setup-r v2 composite
- r-lib/actions/setup-r-dependencies v2 composite
DESCRIPTION
cran
- MASS * imports
- copula * imports
- cubature * imports
- dplyr * imports
- extraDistr * imports
- fitdistrplus * imports
- flexsurv * imports
- kdecopula * imports
- ks * imports
- lattice * imports
- latticeExtra * imports
- lme4 * imports
- logistf * imports
- maxLik * imports
- msm * imports
- mvtnorm * imports
- nlme * imports
- parallel * imports
- pbapply * imports
- purrr * imports
- rms * imports
- rvinecopulib * imports
- stringr * imports
- survival * imports
- withr * imports
- testthat >= 3.0.0 suggests