tidycwl

Tidy Common Workflow Language Tools and Workflows

https://github.com/sbg/tidycwl

Science Score: 26.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • CITATION.cff file
  • codemeta.json file
    Found codemeta.json file
  • .zenodo.json file
    Found .zenodo.json file
  • DOI references
  • Academic publication links
  • Committers with academic emails
  • Institutional organization owner
  • JOSS paper metadata
  • Scientific vocabulary similarity
    Low similarity (10.0%) to scientific vocabulary

Keywords

bioinformatics-pipeline common-workflow-language sevenbridges tidyverse

Keywords from Contributors

biocompute biocompute-objects bioinformatics science-communication standardization
Last synced: 6 months ago · JSON representation

Repository

Tidy Common Workflow Language Tools and Workflows

Basic Info
Statistics
  • Stars: 8
  • Watchers: 2
  • Forks: 2
  • Open Issues: 0
  • Releases: 9
Topics
bioinformatics-pipeline common-workflow-language sevenbridges tidyverse
Created over 6 years ago · Last pushed over 1 year ago
Metadata Files
Readme Changelog

README.md

tidycwl

Lifecycle: experimental CRAN Version Travis build status Downloads from the RStudio CRAN mirror

Read, parse, and visualize Common Workflow Language (CWL) workflows.

The Common Workflow Language is an open standard for describing data analysis workflows. This package takes the raw Common Workflow Language workflows encoded in JSON or YAML and turns the workflow elements into tidy data frames or lists. A graph representation for the workflow can be constructed and visualized with the parsed workflow inputs, outputs, and steps. Users can embed the visualizations in their Shiny applications, and export them as HTML files or static images.

Check out the vignette for a quick introduction.

Installation

To download and install tidycwl from CRAN:

r install.packages("tidycwl")

Or try the development version on GitHub:

```r

install.packages("remotes")

remotes::install_github("sbg/tidycwl") ```

Copyright

© 2020 Seven Bridges Genomics, Inc. All rights reserved.

This project is licensed under the GNU Affero General Public License v3.

Owner

  • Name: Seven Bridges
  • Login: sbg
  • Kind: organization
  • Location: Cambridge, MA

GitHub Events

Total
Last Year

Committers

Last synced: over 2 years ago

All Time
  • Total Commits: 49
  • Total Committers: 3
  • Avg Commits per committer: 16.333
  • Development Distribution Score (DDS): 0.184
Past Year
  • Commits: 0
  • Committers: 0
  • Avg Commits per committer: 0.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
Nan Xiao me@n****e 40
Jeffrey Grover j****r@s****m 5
Nan Xiao n****o@s****m 4
Committer Domains (Top 20 + Academic)

Issues and Pull Requests

Last synced: 8 months ago

All Time
  • Total issues: 1
  • Total pull requests: 4
  • Average time to close issues: 3 days
  • Average time to close pull requests: 20 minutes
  • Total issue authors: 1
  • Total pull request authors: 2
  • Average comments per issue: 0.0
  • Average comments per pull request: 0.0
  • Merged pull requests: 4
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Top Authors
Issue Authors
  • groverj3 (1)
Pull Request Authors
  • groverj3 (3)
  • seacevedo (1)
Top Labels
Issue Labels
bug (1)
Pull Request Labels
bug (1)

Packages

  • Total packages: 1
  • Total downloads:
    • cran 256 last-month
  • Total dependent packages: 0
  • Total dependent repositories: 0
  • Total versions: 5
  • Total maintainers: 1
cran.r-project.org: tidycwl

Tidy Common Workflow Language Tools and Workflows

  • Versions: 5
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Downloads: 256 Last month
Rankings
Stargazers count: 18.7%
Forks count: 21.9%
Dependent packages count: 29.8%
Average: 32.8%
Dependent repos count: 35.5%
Downloads: 58.2%
Maintainers (1)
Last synced: 6 months ago

Dependencies

DESCRIPTION cran
  • dplyr * imports
  • htmlwidgets * imports
  • jsonlite * imports
  • magrittr * imports
  • visNetwork * imports
  • webshot * imports
  • yaml * imports
  • knitr * suggests
  • rmarkdown * suggests
  • shiny * suggests