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datacutr

Apply a datacut to SDTM in R

https://github.com/pharmaverse/datacutr

Science Score: 26.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (15.3%) to scientific vocabulary
Last synced: 9 months ago · JSON representation

Repository

Apply a datacut to SDTM in R

Basic Info
Statistics
  • Stars: 15
  • Watchers: 2
  • Forks: 3
  • Open Issues: 9
  • Releases: 2
Created almost 4 years ago · Last pushed 9 months ago
Metadata Files
Readme Changelog License

README.md

datacutr

SDTM Datacut in R

<!-- note: insert CRAN Status here when ready --> <!-- note: insert Test status here when ready --> Test Coverage CRAN status <!-- badges: end -->

Purpose

To provide an open source tool that enables the pharmaceutical programming community to apply a data cut to SDTM data in R.

Installation

The package is available from CRAN and can be installed by running the following,

r install.packages("datacutr")

To install the latest development version of the package directly from GitHub use the following code::

```r if (!requireNamespace("remotes", quietly = TRUE)) { install.packages("remotes") }

remotes::install_github("pharmaverse/datacutr", ref = "devel") ```

Scope

This package works with tabulation data following an SDTM standard. For ease of processing, the assumption is that supplemental qualifiers have been combined with their parent domain prior to the application of the cut process (sometimes labeled as SDTMv). The user has the flexibility to select the type of cut applied to each SDTM domain (either no cut, patient cut, date cut, or a special DM cut).

References and Documentation

  • Please go to Get Started section to start using {datacutr}
  • Please go to Function Reference section for a break down of all functions created by {datacutr}
  • Please see the Contribution Model for how to get involved with making contributions

Contact

The following support and communications between user and developer community is recommended:

  • Slack - for informal discussions, Q&A and building our user community. If you don't have access, use this link to join the pharmaverse Slack workspace
  • GitHub Issues - for direct feedback, enhancement requests or raising bugs

Owner

  • Name: pharmaverse
  • Login: pharmaverse
  • Kind: organization
  • Location: Switzerland

GitHub Events

Total
  • Create event: 11
  • Release event: 1
  • Issues event: 27
  • Watch event: 3
  • Delete event: 2
  • Issue comment event: 23
  • Push event: 82
  • Pull request event: 30
  • Pull request review event: 10
  • Fork event: 1
Last Year
  • Create event: 11
  • Release event: 1
  • Issues event: 27
  • Watch event: 3
  • Delete event: 2
  • Issue comment event: 23
  • Push event: 82
  • Pull request event: 30
  • Pull request review event: 10
  • Fork event: 1

Issues and Pull Requests

Last synced: 9 months ago

All Time
  • Total issues: 19
  • Total pull requests: 38
  • Average time to close issues: 9 months
  • Average time to close pull requests: 11 days
  • Total issue authors: 5
  • Total pull request authors: 6
  • Average comments per issue: 0.58
  • Average comments per pull request: 1.13
  • Merged pull requests: 29
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 9
  • Pull requests: 26
  • Average time to close issues: 14 days
  • Average time to close pull requests: 6 days
  • Issue authors: 3
  • Pull request authors: 5
  • Average comments per issue: 0.56
  • Average comments per pull request: 1.08
  • Merged pull requests: 19
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • barnett11 (17)
  • lorenzwalthert (1)
  • manciniedoardo (1)
  • andriusa3 (1)
  • brainx64 (1)
Pull Request Authors
  • barnett11 (29)
  • alanaharris22 (5)
  • cicdguy (5)
  • reesnj (2)
  • MichaelChirico (2)
  • csandrews21 (1)
Top Labels
Issue Labels
enhancement (4) bug (3)
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • cran 564 last-month
  • Total dependent packages: 0
  • Total dependent repositories: 0
  • Total versions: 5
  • Total maintainers: 1
cran.r-project.org: datacutr

SDTM Datacut

  • Versions: 5
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Downloads: 564 Last month
Rankings
Dependent packages count: 29.8%
Dependent repos count: 35.4%
Average: 51.6%
Downloads: 89.7%
Maintainers (1)
timothy.barnett@roche.com
Last synced: 9 months ago

Dependencies

DESCRIPTION cran
  • R >= 3.5 depends
  • admiral * imports
  • assertthat * imports
  • dplyr * imports
  • hms * imports
  • lifecycle * imports
  • lubridate * imports
  • magrittr * imports
  • purrr * imports
  • rlang * imports
  • stringr * imports
  • tidyr * imports
  • tidyselect * imports
  • DT * suggests
  • admiral.test * suggests
  • covr * suggests
  • devtools * suggests
  • diffdf * suggests
  • knitr * suggests
  • lintr * suggests
  • methods * suggests
  • miniUI * suggests
  • pkgdown * suggests
  • rmarkdown * suggests
  • roxygen2 * suggests
  • spelling * suggests
  • styler * suggests
  • testthat * suggests
  • tibble * suggests
  • usethis * suggests
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