Data

Tools

Indexes

Applications

Experiments

Open Source Science

fitmix

https://github.com/guven-code/fitmix

Science Score: 13.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ○
    codemeta.json file
  • ○
    .zenodo.json file
  • ✓
    DOI references
    Found 2 DOI reference(s) in README
  • ○
    Academic publication links
  • ○
    Committers with academic emails
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (5.7%) to scientific vocabulary
Last synced: 10 months ago · JSON representation

Repository

Basic Info
  • Host: GitHub
  • Owner: guven-code
  • Language: R
  • Default Branch: master
  • Size: 10.7 KB
Statistics
  • Stars: 0
  • Watchers: 1
  • Forks: 0
  • Open Issues: 0
  • Releases: 0
Created about 5 years ago · Last pushed about 5 years ago
Metadata Files
Readme

README.rd 

Fits the lifespan datasets of biological systems such as yeast, fruit flies, and other similar biological units with well-known finite mixture models introduced by Farewell et al. (1982)  and Al-Hussaini et al. (2000) . Estimates parameter space fitting of a lifespan dataset with finite mixtures of parametric distributions. Computes the following tasks; 1) Estimates parameter space of the finite mixture model
by implementing the expectation maximization (EM) algorithm. 2) Finds a sequence of four goodness-of-fit measures consist of Akaike Information Criterion (AIC), Bayesian Information Criterion (BIC), Kolmogorov-Smirnov (KS), and log-likelihood (log-likelihood) statistics. 3)The initial values is determined by k-means clustering.

Mixture Model Fitting of Lifespan (Survival) Data
fitmix: Fits lifespan (survival) data with one of the models; Gompertz, Log-logistic, Log-normal, and Weibull.
To install the package fitmix:
require(“devtools”)
install.packages("devtools")
library("devtools")
install_github("guven-code/fitmix")

Owner

  • Name: mathbioGVN
  • Login: guven-code
  • Kind: user

works on mathematical and computational biology

GitHub Events

Total
Last Year

Committers

Last synced: over 3 years ago

All Time
  • Total Commits: 4
  • Total Committers: 1
  • Avg Commits per committer: 4.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
emineguven e****3@g****m 4

Issues and Pull Requests

Last synced: 10 months ago

All Time
  • Total issues: 0
  • Total pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Total issue authors: 0
  • Total pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
Pull Request Authors
Top Labels
Issue Labels
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • cran 192 last-month
  • Total dependent packages: 0
  • Total dependent repositories: 0
  • Total versions: 1
  • Total maintainers: 1
cran.r-project.org: fitmix

Finite Mixture Model Fitting of Lifespan Datasets

  • Versions: 1
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Downloads: 192 Last month
Rankings
Forks count: 28.8%
Dependent packages count: 29.8%
Stargazers count: 35.2%
Dependent repos count: 35.5%
Average: 42.5%
Downloads: 83.1%
Maintainers (1)
emine.guven33@gmail.com
Last synced: 10 months ago

Dependencies

DESCRIPTION cran
  • R >= 3.1.0 depends
  • stats * imports
  • knitr * suggests
  • rmarkdown * suggests