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stelfi

R package to fit spatiotemporal point process models using TMB

https://github.com/cmjt/stelfi

Science Score: 39.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 4 DOI reference(s) in README
  • ○
    Academic publication links
  • ○
    Academic email domains
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    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (10.3%) to scientific vocabulary
Last synced: 10 months ago · JSON representation

Repository

R package to fit spatiotemporal point process models using TMB

Basic Info
Statistics
  • Stars: 8
  • Watchers: 3
  • Forks: 1
  • Open Issues: 0
  • Releases: 4
Created almost 8 years ago · Last pushed 11 months ago
Metadata Files
Readme Changelog License

README.md

stelfi: A package to fit Hawkes and log-Gaussian Cox point processes using template model builder

R-CMD-check CRAN status downloads total downloads Codecov test coverage <!-- badges: end -->

stelfi is an R package that fit a range of Hawkes and log-Gaussian Cox point process models. Models are fitted via maximum likelihood using Template Model Builder.

Citation

Jones-Todd, C. M., & van Helsdingen, A. B. M. (2024). stelfi: An R package for fitting Hawkes and log-Gaussian Cox point process models. Ecology and Evolution, 14, e11005. https://doi.org/10.1002/ece3.11005

Installation

From CRAN install.packages("stelfi") or development version from GitHub:

require(devtools) devtools::install_github("cmjt/stelfi")

Examples

This ebook is a work in progress, please bear with me as I update and fix the issues.

If you have any particular examples you'd like to be included please let me know.

Issues

🐛 reports

Owner

  • Name: Charlotte M. Jones-Todd
  • Login: cmjt
  • Kind: user
  • Location: Auckland, NZ
  • Company: University of Auckland

`|=|'-

GitHub Events

Total
  • Issues event: 2
  • Issue comment event: 1
  • Push event: 9
Last Year
  • Issues event: 2
  • Issue comment event: 1
  • Push event: 9

Issues and Pull Requests

Last synced: 10 months ago

All Time
  • Total issues: 5
  • Total pull requests: 1
  • Average time to close issues: about 1 month
  • Average time to close pull requests: about 20 hours
  • Total issue authors: 5
  • Total pull request authors: 1
  • Average comments per issue: 0.6
  • Average comments per pull request: 0.0
  • Merged pull requests: 1
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 1
  • Pull requests: 0
  • Average time to close issues: 26 days
  • Average time to close pull requests: N/A
  • Issue authors: 1
  • Pull request authors: 0
  • Average comments per issue: 1.0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • rsbivand (1)
  • QuQ-ToT-Orz (1)
  • kochbj (1)
  • slamander (1)
  • xueyagaga (1)
Pull Request Authors
  • xiangjiexue (1)
Top Labels
Issue Labels
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • cran 203 last-month
  • Total dependent packages: 0
  • Total dependent repositories: 0
  • Total versions: 4
  • Total maintainers: 1
cran.r-project.org: stelfi

Hawkes and Log-Gaussian Cox Point Processes Using Template Model Builder

  • Versions: 4
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Downloads: 203 Last month
Rankings
Forks count: 21.9%
Stargazers count: 24.2%
Dependent packages count: 29.8%
Dependent repos count: 35.5%
Average: 39.8%
Downloads: 87.8%
Maintainers (1)
cmjonestodd@gmail.com
Last synced: 11 months ago

Dependencies

DESCRIPTION cran
  • R >= 4.1.2 depends
  • sf * depends
  • spatstat.core * depends
  • spatstat.geom * depends
  • Matrix * imports
  • Rcpp >= 1.0.6 imports
  • TMB >= 1.7.20 imports
  • ggplot2 * imports
  • patchwork * imports
  • rgeos * imports
  • sp * imports
  • knitr * suggests
  • maptools * suggests
  • methods * suggests
  • parallel * suggests
  • rmarkdown * suggests
  • spatstat.utils * suggests
  • testthat >= 3.0.0 suggests
.github/workflows/R-CMD-check.yaml actions
  • actions/checkout v2 composite
  • r-lib/actions/check-r-package v2 composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-r-dependencies v2 composite
.github/workflows/test-coverage.yaml actions
  • actions/checkout v3 composite
  • actions/upload-artifact v3 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-r-dependencies v2 composite