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grainscape

Efficient Modelling of Landscape Connectivity, Habitat, and Protected Area Networks

https://github.com/achubaty/grainscape

Science Score: 46.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ✓
    Academic publication links
    Links to: zenodo.org
  • ✓
    Committers with academic emails
    1 of 8 committers (12.5%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (18.2%) to scientific vocabulary

Keywords

habitat-connectivity landscape-connectivity r r-package spatial-graphs
Last synced: 6 months ago · JSON representation

Repository

Efficient Modelling of Landscape Connectivity, Habitat, and Protected Area Networks

Basic Info
Statistics
  • Stars: 20
  • Watchers: 3
  • Forks: 2
  • Open Issues: 4
  • Releases: 5
Topics
habitat-connectivity landscape-connectivity r r-package spatial-graphs
Created over 9 years ago · Last pushed about 1 year ago
Metadata Files
Readme Changelog

README.md

grainscape

R-CMD-check CRAN_Status_Badge DOI Codecov test coverage <!-- badges: end -->

Efficient Modelling of Landscape Connectivity, Habitat, and Protected Area Networks

Given a landscape resistance surface, creates grains of connectivity and minimum planar graph models that can be used to calculate effective distances for landscape connectivity at multiple scales. This is a cross-platform reimplementation and update of the grainscape package (http://grainscape.r-forge.r-project.org).

To cite grainscape in publications, see citation("grainscape").

Installation

From CRAN

r install.packages("grainscape")

From GitHub

  1. Install development libraries: building packages from source requires the appropriate development libraries for your operating system. See here for more details.
- *Windows:* install [Rtools](https://cran.r-project.org/bin/windows/Rtools/).
- *macOS:* install Xcode commandline tools from the terminal: `xcode-select --install`. 
- *Debian/Ubuntu Linux:* ensure `r-base-dev` is installed.

  1. Install from GitHub:

    ```r

    install.packages("remotes")

    library("remotes") install_github("achubaty/grainscape") ```

Reporting bugs

Contact us via the package GitHub site: https://github.com/achubaty/grainscape/issues.

Contributions

This Git repository uses the Git Flow branching model (the git flow extension is useful for this). The development branch contains the latest contributions and other code that will appear in the next release, and the main branch contains the code of the latest release, which is exactly what is currently on CRAN.

To make a contribution to the package, just send a pull request. When you send your PR, make sure development is the destination branch on the grainscape repository. Your PR should pass R CMD check --as-cran, which will also be checked by GitHub Actions when the PR is submitted.

Owner

  • Name: Alex Chubaty
  • Login: achubaty
  • Kind: user
  • Location: Calgary, AB
  • Company: @FOR-CAST

Ecologist and simulation modeller, developing landscape-level models of insect dispersal and forest disturbance.

GitHub Events

Total
  • Create event: 2
  • Release event: 1
  • Issues event: 8
  • Watch event: 2
  • Issue comment event: 8
  • Push event: 40
Last Year
  • Create event: 2
  • Release event: 1
  • Issues event: 8
  • Watch event: 2
  • Issue comment event: 8
  • Push event: 40

Committers

Last synced: 7 months ago

All Time
  • Total Commits: 515
  • Total Committers: 8
  • Avg Commits per committer: 64.375
  • Development Distribution Score (DDS): 0.155
Past Year
  • Commits: 53
  • Committers: 1
  • Avg Commits per committer: 53.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
Alex Chubaty a****y@g****m 435
pgalpern p****n 28
Sam Doctolero s****l@u****a 27
ecologics p****n@u****a 18
DESKTOP-L2RVLNC\Sam s****o@g****m 4
jsta s****2@m****u 1
cxfauvelle c****e@g****m 1
stefan7th s****h@e****b 1
Committer Domains (Top 20 + Academic)
ucalgary.ca: 2 msu.edu: 1

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 71
  • Total pull requests: 1
  • Average time to close issues: 9 months
  • Average time to close pull requests: about 1 hour
  • Total issue authors: 7
  • Total pull request authors: 1
  • Average comments per issue: 2.85
  • Average comments per pull request: 3.0
  • Merged pull requests: 1
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 3
  • Pull requests: 0
  • Average time to close issues: about 7 hours
  • Average time to close pull requests: N/A
  • Issue authors: 2
  • Pull request authors: 0
  • Average comments per issue: 1.0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • achubaty (40)
  • ecologics (25)
  • rsbivand (2)
  • Klemet (2)
  • Johnny987654321 (1)
  • krlmlr (1)
  • ChrisBeirne (1)
Pull Request Authors
  • jsta (1)
Top Labels
Issue Labels
resolved in branch (8) enhancement (5) bug (4) vignettes (4) documentation (3) wontfix (2) invalid (2) help wanted (1) in progress (1)
Pull Request Labels

Packages

  • Total packages: 2
  • Total downloads:
    • cran 213 last-month
  • Total dependent packages: 0
    (may contain duplicates)
  • Total dependent repositories: 0
    (may contain duplicates)
  • Total versions: 12
  • Total maintainers: 1
proxy.golang.org: github.com/achubaty/grainscape
  • Versions: 7
  • Dependent Packages: 0
  • Dependent Repositories: 0
Rankings
Dependent packages count: 5.4%
Average: 5.6%
Dependent repos count: 5.8%
Last synced: 6 months ago
cran.r-project.org: grainscape

Landscape Connectivity, Habitat, and Protected Area Networks

  • Versions: 5
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Downloads: 213 Last month
Rankings
Stargazers count: 14.2%
Forks count: 21.9%
Dependent packages count: 29.8%
Average: 31.3%
Dependent repos count: 35.5%
Downloads: 55.0%
Maintainers (1)
alex.chubaty@gmail.com
Last synced: 6 months ago

Dependencies

.github/workflows/R-CMD-check.yaml actions
  • actions/cache v1 composite
  • actions/checkout v2 composite
  • actions/upload-artifact main composite
  • r-lib/actions/setup-pandoc master composite
  • r-lib/actions/setup-r master composite
  • r-lib/actions/setup-tinytex v1 composite
.github/workflows/test-coverage.yaml actions
  • actions/cache v1 composite
  • actions/checkout v2 composite
  • r-lib/actions/setup-pandoc master composite
  • r-lib/actions/setup-r master composite
DESCRIPTION cran
  • Rcpp >= 0.12.11.4 imports
  • ggplot2 * imports
  • grDevices * imports
  • graphics * imports
  • igraph * imports
  • methods * imports
  • raster * imports
  • rgdal * imports
  • sp * imports
  • utils * imports
  • covr * suggests
  • cowplot * suggests
  • ggthemes * suggests
  • knitr * suggests
  • parallel * suggests
  • rgeos * suggests
  • rmarkdown * suggests
  • spelling * suggests
  • testthat * suggests
.github/workflows/pkgdown.yaml actions
  • JamesIves/github-pages-deploy-action v4.4.1 composite
  • actions/checkout v3 composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-r-dependencies v2 composite