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SIMplyBee

SIMplyBee R package extends AlphaSimR for simulating honeybee populations and breeding programmes

https://github.com/highlanderlab/simplybee

Science Score: 39.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 2 DOI reference(s) in README
  • ○
    Academic publication links
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (8.4%) to scientific vocabulary
Last synced: 9 months ago · JSON representation

Repository

SIMplyBee R package extends AlphaSimR for simulating honeybee populations and breeding programmes

Basic Info
  • Host: GitHub
  • Owner: HighlanderLab
  • License: other
  • Language: R
  • Default Branch: main
  • Homepage: http://www.simplybee.info/
  • Size: 140 MB
Statistics
  • Stars: 2
  • Watchers: 2
  • Forks: 6
  • Open Issues: 75
  • Releases: 1
Created over 4 years ago · Last pushed about 1 year ago
Metadata Files
Readme Changelog License

README.md

SIMplyBee README

SIMplyBee R package extends AlphaSimR for simulating honeybee populations and breeding programmes

Publication

Obšteter J., Strachan. L. K., Bubnič J., Prešern J., Gorjanc G. 2023. Genetics Selection Evolution, 55, 31. https://doi.org/10.1186/s12711-023-00798-y

Documentation

http://simplybee.info

Download

SIMplyBee is available on CRAN. You can install it with 

install.packages(pkg = "SIMplyBee")

The development (and potentially unstable!) versions of SIMplyBee can be accessed from the main and devel GitHub branches using:

# New stable version of SIMplyBee before its submitted to CRAN
devtools::install_github(repo="HighlanderLab/SIMplyBee@main")

# Development version of SIMplyBee
devtools::install_github(repo="HighlanderLab/SIMplyBee@devel")

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Owner

  • Name: HighlanderLab
  • Login: HighlanderLab
  • Kind: organization
  • Location: Edinburgh

Software for the management and improvement of populations using data science, genetics, and breeding

GitHub Events

Total
  • Create event: 1
  • Release event: 1
  • Issues event: 20
  • Watch event: 2
  • Delete event: 1
  • Issue comment event: 35
  • Push event: 11
  • Pull request review comment event: 3
  • Pull request review event: 4
  • Pull request event: 18
  • Fork event: 1
Last Year
  • Create event: 1
  • Release event: 1
  • Issues event: 20
  • Watch event: 2
  • Delete event: 1
  • Issue comment event: 35
  • Push event: 11
  • Pull request review comment event: 3
  • Pull request review event: 4
  • Pull request event: 18
  • Fork event: 1

Issues and Pull Requests

Last synced: 10 months ago

All Time
  • Total issues: 117
  • Total pull requests: 107
  • Average time to close issues: 8 months
  • Average time to close pull requests: 7 days
  • Total issue authors: 5
  • Total pull request authors: 5
  • Average comments per issue: 2.96
  • Average comments per pull request: 0.36
  • Merged pull requests: 99
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 16
  • Pull requests: 28
  • Average time to close issues: 2 months
  • Average time to close pull requests: about 2 hours
  • Issue authors: 3
  • Pull request authors: 2
  • Average comments per issue: 0.5
  • Average comments per pull request: 0.11
  • Merged pull requests: 25
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • gregorgorjanc (58)
  • janaobsteter (46)
  • LStrachan (6)
  • JerBub (2)
  • DrMulusewFikere (2)
Pull Request Authors
  • janaobsteter (55)
  • LStrachan (25)
  • gregorgorjanc (19)
  • JerBub (8)
  • gaynorr (1)
Top Labels
Issue Labels
enhancement (23) package (19) question (18) quan_gen (15) high_priority (14) documentation (14) repro&nat_pop (11) spatial (8) bug (8) events (8) speed (8) low_priority (6) done (6) future (4) simParamBee (4) help wanted (1) invalid (1) wontfix (1)
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • cran 164 last-month
  • Total dependent packages: 0
  • Total dependent repositories: 0
  • Total versions: 3
  • Total maintainers: 1
cran.r-project.org: SIMplyBee

'AlphaSimR' Extension for Simulating Honeybee Populations and Breeding Programmes

  • Versions: 3
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Downloads: 164 Last month
Rankings
Forks count: 12.8%
Dependent packages count: 29.8%
Stargazers count: 31.7%
Dependent repos count: 35.5%
Average: 37.7%
Downloads: 78.9%
Maintainers (1)
obsteter.jana@gmail.com
Last synced: 10 months ago

Dependencies

.github/workflows/R-CMD-check.yaml actions
  • actions/checkout v3 composite
  • r-lib/actions/check-r-package v2 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-r-dependencies v2 composite
DESCRIPTION cran
  • AlphaSimR >= 1.3.2 depends
  • R >= 3.3.0 depends
  • R6 * imports
  • extraDistr >= 1.9.1 imports
  • methods * imports
  • stats * imports
  • utils * imports
  • Matrix * suggests
  • ggplot2 * suggests
  • knitr * suggests
  • rmarkdown * suggests
  • testthat >= 3.0.0 suggests
.github/workflows/pkgdown.yaml actions
  • JamesIves/github-pages-deploy-action v4.4.1 composite
  • actions/checkout v3 composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-r-dependencies v2 composite