guidedPLS
Supervised dimensional reduction by guided partial least squares
Science Score: 36.0%
This score indicates how likely this project is to be science-related based on various indicators:
-
○CITATION.cff file
-
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
-
✓Academic publication links
Links to: zenodo.org -
○Academic email domains
-
○Institutional organization owner
-
○JOSS paper metadata
-
○Scientific vocabulary similarity
Low similarity (9.6%) to scientific vocabulary
Repository
Supervised dimensional reduction by guided partial least squares
Basic Info
- Host: GitHub
- Owner: rikenbit
- License: other
- Language: R
- Default Branch: main
- Size: 439 KB
Statistics
- Stars: 0
- Watchers: 4
- Forks: 0
- Open Issues: 0
- Releases: 2
Metadata Files
README.md
guidedPLS
R package for supervised dimensional reduction by guided partial least squares
Installation
====== ~~~~ git clone https://github.com/rikenbit/guidedPLS/ R CMD INSTALL guidedPLS ~~~~ or type the code below in the R console window ~~~~ library(devtools) devtools::install_github("rikenbit/guidedPLS") ~~~~
References
====== - Sparse Partial Least Squares (sPLS)/Sparse Partial Least Squares Discriminant Analysis (sPLS-DA) - Lê Cao, et al. A Sparse PLS for Variable Selection when Integrating Omics Data. Statistical Applications in Genetics and Molecular Biology, 7(1), 2008 - Guided Principal Component Analysis (guided-PCA) - Reese S E, et al. A new statistic for identifying batch effects in high-throughput genomic data that uses guided principal component analysis. Bioinformatics, 29(22), 2877-2883, 2013 - Multiset Canonical Correlations Analysis - Nielsen A A. Multiset Canonical Correlations Analysis and Multispectral, Truly Multitemporal Remote Sensing Data. IEEE Transactions on Image Processing, 11(3), 293-305, 2002
Contributing
If you have suggestions for how guidedPLS could be improved, or want to report a bug, open an issue! We'd love all and any contributions.
For more, check out the Contributing Guide.
Authors
- Koki Tsuyuzaki
Owner
- Name: RIKEN BiT
- Login: rikenbit
- Kind: organization
- Location: Japan
- Website: https://bit.riken.jp/
- Twitter: dritoshien
- Repositories: 80
- Profile: https://github.com/rikenbit
Laboratory for Bioinformatics Research, RIKEN Center for Biosystems Dynamics Research
GitHub Events
Total
- Push event: 2
Last Year
- Push event: 2
Issues and Pull Requests
Last synced: 10 months ago
All Time
- Total issues: 0
- Total pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Total issue authors: 0
- Total pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
Pull Request Authors
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
-
Total downloads:
- cran 205 last-month
- Total docker downloads: 101
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 3
- Total maintainers: 1
cran.r-project.org: guidedPLS
Supervised Dimensional Reduction by Guided Partial Least Squares
- Homepage: https://github.com/rikenbit/guidedPLS
- Documentation: http://cran.r-project.org/web/packages/guidedPLS/guidedPLS.pdf
- License: MIT + file LICENSE
-
Latest release: 1.1.0
published 10 months ago
Rankings
Maintainers (1)
Dependencies
- actions/checkout v2 composite
- docker/build-push-action v1 composite
- docker/login-action v1 composite
- R >= 3.4.0 depends
- irlba * imports
- fields * suggests
- knitr * suggests
- rmarkdown * suggests
- testthat * suggests
- bioconductor/bioconductor_docker devel build