sprex

Calculate species richness functions for rarefaction and extrapolation

https://github.com/swfsc/sprex

Repository

Calculate species richness functions for rarefaction and extrapolation

https://github.com/SWFSC/sprex/blob/master/

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# sprex  [![DOI](https://zenodo.org/badge/23926/EricArcher/sprex.svg)](https://zenodo.org/badge/latestdoi/23926/EricArcher/sprex)

## Description

*sprex* is a package for calculating species richness for rarefaction and extrapolation. It contains functions for calculating non-parametric species richness such as jackknife, Chao1, and ACE. Also available are functions for plotting species richness and extrapolation curves, and standard diversity and entropy indices.

## Installation

To install the stable version from CRAN:

```r
install.packages('sprex')
```

To install the latest version from GitHub:

```r
# make sure you have devtools installed
if (!require('devtools')) install.packages('devtools')

# install from GitHub
devtools::install_github('ericarcher/sprex')
```

## Contact

* submit suggestions and bug-reports: 
* send a pull request: 
* e-mail: 

## version 1.4.2 (on CRAN)

* removed `plot.discovery.curve()`
* redesigned `discovery.curve()` to return data frame defining curve and plotting curve if selected.
* added `diversity()` to compute diversity and entropy indices

## version 1.4.1

* added `pct.range` argument to `clench` function to specify minimum and maximum percentages of sample sizes
* changed argument `m` in `expected.num.species` function to accept vectors and return a matrix

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