Data

Tools

Indexes

Applications

Experiments

Open Source Science

kernscr

Kernel Machine Score Test for Pathway Analysis in the Presence of Semi-Competing Risks

https://github.com/borishejblum/kernscr

Science Score: 49.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 3 DOI reference(s) in README
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    2 of 5 committers (40.0%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (10.3%) to scientific vocabulary
Last synced: 6 months ago · JSON representation

Repository

Kernel Machine Score Test for Pathway Analysis in the Presence of Semi-Competing Risks

Basic Info
Statistics
  • Stars: 0
  • Watchers: 3
  • Forks: 0
  • Open Issues: 0
  • Releases: 0
Created almost 10 years ago · Last pushed 7 months ago
Metadata Files
Readme Changelog License

README.Rmd 

---
output: github_document
---



```{r, include = FALSE}
knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>",
  fig.path = "man/figures/README-",
  out.width = "100%"
)
```
# kernscr


[![CRAN status](https://www.r-pkg.org/badges/version/kernscr)](https://CRAN.R-project.org/package=kernscr)
[![R-CMD-check](https://github.com/borishejblum/kernscr/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/borishejblum/kernscr/actions/workflows/R-CMD-check.yaml)
[![Downloads](https://cranlogs.r-pkg.org/badges/kernscr?color=blue)](https://www.r-pkg.org/pkg/kernscr)


`kernscr` is a R package which performs score test for genetic pathway analysis in the presence of semi-competing risks.

>Neykov M, Hejblum BP and Sinnott JA (2018). Kernel Machine Score Test for Pathway Analysis in the Presence of Semi-Competing Risks. *Statistical Methods in Medical Research*, **27**(4): 1099-1114. [](https://doi.org/10.1177/0962280216653427)

## Installation

You can install the released version of `kernscr` from [CRAN](https://CRAN.R-project.org/package=kernscr) with:
``` r
install.packages("kernscr")
```

Owner

  • Name: Boris
  • Login: borishejblum
  • Kind: user
  • Location: Bordeaux, France
  • Company: Université de Bordeaux

GitHub Events

Total
  • Push event: 13
  • Create event: 1
Last Year
  • Push event: 13
  • Create event: 1

Committers

Last synced: almost 3 years ago

All Time
  • Total Commits: 58
  • Total Committers: 5
  • Avg Commits per committer: 11.6
  • Development Distribution Score (DDS): 0.517
Top Committers
Name Email Commits
borishejblum b****h@g****m 28
Boris b****i@g****m 20
borishejblum b****h@g****m 7
Jennifer Anne Sinnott j****t@s****u 2
borishejblum b****m@u****r 1
Committer Domains (Top 20 + Academic)
u-bordeaux.fr: 1 stat.osu.edu: 1

Issues and Pull Requests

Last synced: 7 months ago

All Time
  • Total issues: 1
  • Total pull requests: 0
  • Average time to close issues: about 13 hours
  • Average time to close pull requests: N/A
  • Total issue authors: 1
  • Total pull request authors: 0
  • Average comments per issue: 0.0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • borishejblum (1)
Pull Request Authors
Top Labels
Issue Labels
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • cran 160 last-month
  • Total dependent packages: 0
  • Total dependent repositories: 0
  • Total versions: 6
  • Total maintainers: 1
cran.r-project.org: kernscr

Kernel Machine Score Test for Semi-Competing Risks

  • Versions: 6
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Downloads: 160 Last month
Rankings
Forks count: 28.8%
Dependent packages count: 29.8%
Stargazers count: 35.2%
Dependent repos count: 35.5%
Average: 38.9%
Downloads: 65.5%
Maintainers (1)
boris.hejblum@u-bordeaux.fr
Last synced: 6 months ago

Dependencies

DESCRIPTION cran
  • R >= 3.0 depends
  • MASS * imports
  • graphics * imports
  • mvtnorm * imports
  • stats * imports
  • gdata * suggests
  • org.Hs.eg.db * suggests
.github/workflows/R-CMD-check.yaml actions
  • actions/checkout v4 composite
  • r-lib/actions/check-r-package v2 composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-r-dependencies v2 composite
.github/workflows/cran-status-checks.yaml actions
  • actions/checkout v4 composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-r-dependencies v2 composite
.github/workflows/pkgdown.yaml actions
  • JamesIves/github-pages-deploy-action v4.5.0 composite
  • actions/checkout v4 composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-r-dependencies v2 composite
.github/workflows/rhub.yaml actions
  • r-hub/actions/checkout v1 composite
  • r-hub/actions/platform-info v1 composite
  • r-hub/actions/run-check v1 composite
  • r-hub/actions/setup v1 composite
  • r-hub/actions/setup-deps v1 composite
  • r-hub/actions/setup-r v1 composite