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biometryassist

A package to aid in teaching experimental design and analysis through easy access and documentation of helper functions. Renaming of previous BiometryTraining package.

https://github.com/biometryhub/biometryassist

Science Score: 36.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    1 of 3 committers (33.3%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (21.2%) to scientific vocabulary

Keywords

biometry experimental-design package r rstats rstats-package teaching
Last synced: 6 months ago · JSON representation

Repository

A package to aid in teaching experimental design and analysis through easy access and documentation of helper functions. Renaming of previous BiometryTraining package.

Basic Info
Statistics
  • Stars: 7
  • Watchers: 3
  • Forks: 3
  • Open Issues: 18
  • Releases: 8
Topics
biometry experimental-design package r rstats rstats-package teaching
Created about 4 years ago · Last pushed 6 months ago
Metadata Files
Readme Changelog License

README.Rmd 

---
output: github_document
---



```{r, include = FALSE}
knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>",
  fig.path = "man/figures/README-",
  out.width = "100%"
)
```

# biometryassist

```{r, echo = FALSE}
description <- read.dcf('DESCRIPTION')
version <- as.vector(description[, 'Version'])
min.r <- substr(description[,"Depends"], 7, 11)
```


[![Project Status: Active:  The project has reached a stable, usable state and is being actively developed.](https://www.repostatus.org/badges/latest/active.svg)](https://www.repostatus.org/#active)
[![Codecov test coverage](https://codecov.io/gh/biometryhub/biometryassist/branch/main/graph/badge.svg)](https://app.codecov.io/gh/biometryhub/biometryassist?branch=main)
[![R build status](https://github.com/biometryhub/biometryassist/workflows/R-CMD-check/badge.svg)](https://github.com/biometryhub/biometryassist/actions)
[![minimal R version](https://img.shields.io/badge/R%3E%3D-`r min.r`-6666ff.svg)](https://cran.r-project.org/)
[![packageversion](https://img.shields.io/badge/Package%20version-`r gsub('-', '--', version)`-orange.svg?style=flat-square)](https://github.com/biometryhub/biometryassist/commits/main)
[![Licence](https://img.shields.io/github/license/mashape/apistatus.svg)](https://choosealicense.com/licenses/mit/)
[![](https://cranlogs.r-pkg.org/badges/biometryassist)](https://cran.r-project.org/package=biometryassist)
![Badge](https://hitscounter.dev/api/hit?url=https%3A%2F%2Fbiometryhub.github.io%2Fbiometryassist&label=Hits&icon=arrow-down-circle&color=%23198754)



The goal of biometryassist is to provide functions to aid in the Design and Analysis of Agronomic-style experiments through easy access to documentation and helper functions, especially while teaching these concepts.

*This package is a renamed version of BiometryTraining which is no longer maintained, but can still be found at https://biometryhub.github.io/BiometryTraining/*

----

## Installation

As of version 1.0.0 the biometryassist package is now [on CRAN](https://cran.r-project.org/package=biometryassist) 🙌
That means that installation is as easy as running:

```{r installing_cran, eval=FALSE}
install.packages("biometryassist")
```


### Development version

⚠ **Warning**: The development version is unstable and liable to change more often than the CRAN version. It may have bugs fixed, but there may be other currently unknown bugs introduced. ⚠


Use the following code to install the latest development version of this package.

```{r eval=F}
if(!require("remotes")) install.packages("remotes") 
remotes::install_github("biometryhub/biometryassist@dev")
```


## Using the package

Load the package and start using it with:

```{r eval=F}
library(biometryassist)
```

If you find this package useful, please cite it! Type `citation("biometryassist")` on the R console to find out how.

## Troubleshooting Installation

- If you receive an error that the package could not install because `rlang` or another package could not be upgraded, the easiest way to deal with this is to uninstall the package(s) that could not be updated (`remove.packages("rlang")`). Then restart R, re-install with `install.packages("rlang")` and then try installing `biometryassist` again.

Owner

  • Name: University of Adelaide Biometry Hub
  • Login: biometryhub
  • Kind: organization
  • Email: biometryhub@adelaide.edu.au
  • Location: Adelaide, Australia

GitHub Events

Total
  • Create event: 2
  • Release event: 1
  • Issues event: 36
  • Delete event: 5
  • Issue comment event: 13
  • Push event: 109
  • Pull request review event: 2
  • Pull request event: 22
  • Fork event: 2
Last Year
  • Create event: 2
  • Release event: 1
  • Issues event: 36
  • Delete event: 5
  • Issue comment event: 13
  • Push event: 109
  • Pull request review event: 2
  • Pull request event: 22
  • Fork event: 2

Committers

Last synced: over 2 years ago

All Time
  • Total Commits: 185
  • Total Committers: 3
  • Avg Commits per committer: 61.667
  • Development Distribution Score (DDS): 0.022
Past Year
  • Commits: 77
  • Committers: 2
  • Avg Commits per committer: 38.5
  • Development Distribution Score (DDS): 0.013
Top Committers
Name Email Commits
Sam Rogers 7****m 181
Sharon Nielsen 6****s 3
Matthew Prescott a****6@a****u 1
Committer Domains (Top 20 + Academic)
adelaide.edu.au: 1

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 85
  • Total pull requests: 30
  • Average time to close issues: 8 months
  • Average time to close pull requests: 5 days
  • Total issue authors: 9
  • Total pull request authors: 4
  • Average comments per issue: 0.86
  • Average comments per pull request: 0.2
  • Merged pull requests: 29
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 19
  • Pull requests: 14
  • Average time to close issues: 4 months
  • Average time to close pull requests: about 15 hours
  • Issue authors: 3
  • Pull request authors: 3
  • Average comments per issue: 0.47
  • Average comments per pull request: 0.14
  • Merged pull requests: 13
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • rogerssam (74)
  • lsaverbio (3)
  • snstats (2)
  • BB1464 (2)
  • teunbrand (1)
  • daSilva5 (1)
  • RussellAndrewEdson (1)
  • igorkf (1)
  • thomasp85 (1)
Pull Request Authors
  • rogerssam (42)
  • Copilot (2)
  • daSilva5 (2)
  • teunbrand (2)
  • igorkf (1)
Top Labels
Issue Labels
enhancement (47) fixed (38) bug (22) wontfix (9) tests (3) question (2) documentation (2) help wanted (1)
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • cran 329 last-month
  • Total docker downloads: 21,613
  • Total dependent packages: 0
  • Total dependent repositories: 0
  • Total versions: 10
  • Total maintainers: 1
cran.r-project.org: biometryassist

Functions to Assist Design and Analysis of Agronomic Experiments

  • Versions: 10
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Downloads: 329 Last month
  • Docker Downloads: 21,613
Rankings
Stargazers count: 26.2%
Forks count: 28.8%
Dependent packages count: 29.8%
Average: 30.3%
Downloads: 31.5%
Dependent repos count: 35.5%
Maintainers (1)
biometrytraining@adelaide.edu.au
Last synced: 6 months ago

Dependencies

.github/workflows/R-CMD-check.yaml actions
  • actions/cache v3 composite
  • actions/checkout v3 composite
  • actions/upload-artifact master composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
.github/workflows/pkgdown.yaml actions
  • actions/cache v3 composite
  • actions/checkout v3 composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
.github/workflows/test-coverage.yaml actions
  • actions/cache v3 composite
  • actions/checkout v3 composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
DESCRIPTION cran
  • R >= 4.0.0 depends
  • ARTool * enhances
  • asreml * enhances
  • lme4 * enhances
  • nlme * enhances
  • sommer * enhances
  • agricolae * imports
  • cowplot * imports
  • curl * imports
  • farver * imports
  • ggplot2 * imports
  • lattice * imports
  • multcompView * imports
  • pracma * imports
  • predictmeans * imports
  • rlang >= 1.0.0 imports
  • scales * imports
  • stringi * imports
  • withr * imports
  • covr * suggests
  • crayon * suggests
  • getPass * suggests
  • mockery * suggests
  • testthat * suggests
  • vdiffr * suggests